Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181517g00004 ATGCTTGAACAGAAGTGTTACCTTAGGTCACCATTATTGATATGTGTTTTCATCTGCTTCTTGCTGTATCCTGCTGTAAGGGCTGAGATACCACTAGGTTCCAAACTTTCTGTGGTTGACAATGGCAGCTGGGTTTCAAAAAATGGTAACTTTGCAATTGGGTTCTTTAAGATTTCGGATGAGCCTAACCAGTATAGTGTTGGCATTCGGTTCAACGACGAGTCTATACCATATAGCCAACGAACCGTGGTGTGGACTGCTGGGTTTCAGATTGTAGTAGGCAACATGTCCTATTTCCAATTCACCACAAATGGTGAAATGGTCTTGTTTGATGATCAGGGAATGTCTCCATGGAACAGTGGAACTAGTAACAAGGGTGTCGTGTCGGCTTCTCTTCTTGATAATGGCAATCTTGTTCTGATGGACAGAGAGCAAAAGGTCATTTGGCAAAGTTTTGATGATCCAGGCAATACACTTCTTCCAGGACAGTATCTCTCTTGTGATAGTATGCTTCGTGCCGCGACAAAGGATCTAGTGTCAAGTTACTACAGTCTTTCCTTGAATGTTTCAGGACACTTGCTGCTTCGTTGGGAAAGTAATATTCCCTACTGGACAAGCGAAAGCCCTTCCGTTTCGAATCTCACTGCATATCTTACAGACAATGGAGCTCTACAACTTCTGGACAATAGTTCTAATGTTGTTTGGAGTGTGTTTGGAGATGACCACAATGAATCTGTTAACTACCGGTTTCTTAGGATAGATGTGGATGGGAATCTTCGCCTATATTCGTGGGTGGAGGCTTCACAGTCATGGAGATCTGTCTGGCAAGCTGTTGAGAATCAGTGCAAGGTTTTCGCCACTTGTGGTAAACATGGGGTTTGTGTTTTGTCTCCCTCAGGTACTGCTGATTGTGTGTGTCCTTTCGAGCAGACTGACTCTGGGACTTGTTTGGTTCCATATGAACAAAAGTGTGAACCTGGCTCCACTATGATGACATATTCGAACACACACCTATATGGAATTTACCCCATCGATGGTCCGGTTATCATAAGTAGTCTGCATCAATGTATGCAAATATGCCAGAATGACTCAAGGTGTACCGTCGCAACCTTTTCCAACGATGGTGTTCCCCAATGTTCAATAAAGAAATCTGAATACATAACTGGCTATTCAGATCCATCTCTAAGCTCGGTGTCATTTGTTAAGAGATGTTCATTACCATTTGCTGTAAATCCCACACTTGGAAGCTCACCTCCAACAAAACAAGCTCCTAATTTTTGTGTTCCTTGTTTAATTGGAGCAGCCTCAGGCACATGTTTCATTGTTGTTATCCTTCAACTTGGATTTATTTTTTGGATCTATAGAAGAAAAAACTCTACTAGGAGGAAAGACAATTTAGCCTCGACAGGTGCAAATTCGAAGGGTTTAGTTGTGTTATCTTTTTCAGAGATCAAGAGCCTCACTGAGAATTTCAAGGATCAAATTAGGCCAAATATGTTCAAGGGCATGCTACCAAACAAATTCCCAGTTGCAATTAAAGAGCTGAATGCATCCATAGATGAAAGGAAGTTCCGGAGTGCTGTTCTGAAGATTGGAAGCATCCACCACAGGAACCTTGTGAAGCTGGAGGGCTATTGTTGTGTGTTCAATCATAGATTCTTGGTCTACGAGTACTCTAAAAACGGTTCTCTCGACAAGTATCTAGACGATTCCACTCTTTGCAAGAAGCTGACTTGGAGAAGAAGAGTTGACATCTGCTCAAGTGTGGCCAAGGCTATCAATTATCTTCACTCCGAATGCAGGGAGTTTATAAGCCATGGAAATCTCAAGTGTGAAAATGTCATGTTGGATGGTAACTTAGAAGCCAAGGTGAGTGAAGCTGGGTTTGCAATAGTAGATGGCGAGGCAGTGTACTGTGGCTTTTCGGCCGGGAAGGACATAGCAGATTTCGGCAAGTTAGTCCTAACATTGTTGACTGGATGTAGAGATCACATAGATCTTTGTGAGTGGTCATATAAAGAATGGATAGAAGGGAATGCTGCAAATGTGATTGATAAAAGAATTGAAGGTGGTGTGAATTCAAATGAACTCGAGCGCATCTTGAGAATTGCATTCTGGTGCCTACAAAGCGATGAACGTCGAAGGCCTTCAATGGTGGAGGTAGTGAGAGTTCTAGATGGAACATTGAGTGTTGATCCAGCACCACCTCCATTTTCATGCCACAGGCCATTGCCGGAAGAATCTGAGACACAACAAGATAATGTTTCAGAATCTGAGACTCAGTAG 2286 0.4265 MLEQKCYLRSPLLICVFICFLLYPAVRAEIPLGSKLSVVDNGSWVSKNGNFAIGFFKISDEPNQYSVGIRFNDESIPYSQRTVVWTAGFQIVVGNMSYFQFTTNGEMVLFDDQGMSPWNSGTSNKGVVSASLLDNGNLVLMDREQKVIWQSFDDPGNTLLPGQYLSCDSMLRAATKDLVSSYYSLSLNVSGHLLLRWESNIPYWTSESPSVSNLTAYLTDNGALQLLDNSSNVVWSVFGDDHNESVNYRFLRIDVDGNLRLYSWVEASQSWRSVWQAVENQCKVFATCGKHGVCVLSPSGTADCVCPFEQTDSGTCLVPYEQKCEPGSTMMTYSNTHLYGIYPIDGPVIISSLHQCMQICQNDSRCTVATFSNDGVPQCSIKKSEYITGYSDPSLSSVSFVKRCSLPFAVNPTLGSSPPTKQAPNFCVPCLIGAASGTCFIVVILQLGFIFWIYRRKNSTRRKDNLASTGANSKGLVVLSFSEIKSLTENFKDQIRPNMFKGMLPNKFPVAIKELNASIDERKFRSAVLKIGSIHHRNLVKLEGYCCVFNHRFLVYEYSKNGSLDKYLDDSTLCKKLTWRRRVDICSSVAKAINYLHSECREFISHGNLKCENVMLDGNLEAKVSEAGFAIVDGEAVYCGFSAGKDIADFGKLVLTLLTGCRDHIDLCEWSYKEWIEGNAANVIDKRIEGGVNSNELERILRIAFWCLQSDERRRPSMVEVVRVLDGTLSVDPAPPPFSCHRPLPEESETQQDNVSESETQ 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181517g00004 761 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 455 558 - -
Stsc181517g00004 761 Gene3D Hepatocyte Growth Factor 330 406 - -
Stsc181517g00004 761 SMART blect_4 35 155 IPR001480 -
Stsc181517g00004 761 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 207 IPR036426 -
Stsc181517g00004 761 MobiDBLite consensus disorder prediction 732 761 - -
Stsc181517g00004 761 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Stsc181517g00004 761 SUPERFAMILY alpha-D-mannose-specific plant lectins 173 273 IPR036426 -
Stsc181517g00004 761 Gene3D Phosphorylase Kinase; domain 1 453 558 - -
Stsc181517g00004 761 Gene3D - 155 275 IPR036426 -
Stsc181517g00004 761 ProSiteProfiles Bulb-type lectin domain profile. 156 274 IPR001480 -
Stsc181517g00004 761 ProSiteProfiles Protein kinase domain profile. 463 729 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181517g00004 761 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 559 637 - -
Stsc181517g00004 761 ProSiteProfiles PAN/Apple domain profile. 324 404 IPR003609 -
Stsc181517g00004 761 Gene3D Transferase(Phosphotransferase) domain 1 560 636 - -
Stsc181517g00004 761 Gene3D Transferase(Phosphotransferase) domain 1 637 735 - -
Stsc181517g00004 761 CDD B_lectin 36 155 IPR001480 -
Stsc181517g00004 761 PANTHER OS07G0415500 PROTEIN 13 738 - -
Stsc181517g00004 761 Pfam D-mannose binding lectin 82 170 IPR001480 -
Stsc181517g00004 761 SUPERFAMILY Protein kinase-like (PK-like) 500 725 IPR011009 -
Stsc181517g00004 761 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 154 - -
Stsc181517g00004 761 Pfam S-locus glycoprotein domain 243 309 IPR000858 GO:0048544
Stsc181517g00004 761 Pfam Protein tyrosine and serine/threonine kinase 506 630 IPR001245 GO:0004672|GO:0006468
Stsc181517g00004 761 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 638 733 - -
Stsc181517g00004 761 PIRSF SRK 637 761 IPR024171 GO:0004674
Stsc181517g00004 761 PIRSF SRK 4 638 IPR024171 GO:0004674
Stsc181517g00004 761 Gene3D - 26 154 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181517g00004 Stsc-Chr181517 10511 13023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181517g00004 420 735 Receptor kinase-like Gene Family AT4G05200 29.041 1.03e-40 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc181517g00004 PK_Tyr_Ser-Thr 9.5e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181517g00004 - - gmx:100815678 1090.1