Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181514g00008 ATGGCTGCTGCTGGGGTTATTGGTGGTAATTCATGGTCATGGATGCAAATGCAATTAAGAAGGGGTCGAGAAAGGAAACAAGAAAGGAGAGTTGAGATTTGTTGCTCCTCCTCTTCTTCTTTGACGGAATATTATGAGACATTAAGAGTCCAACCTGGTGCGTCTCAATCTGAGGTTAAGAAGGCTTTTAGACAGCTTGCACTGCAGTACCATCCAGATGTATGCAGAGAGAGCAAATGCGGGGTGCAGTTTCAGCAAATAAACCAGGCTTATGATGTTGTAATGTCCAATTTGAGAGGAGAATCCAATGTAATGGAAATGTACGAGGCATGTGAAGATGATGCAGCAGACATTGGTGAAGGAATGAGGGGAATGAATGATCCAGATTGGGACCTGTGGGAAGAGTGGATGGGATGGGAAGGCGCAGGAATTCGTGATTATTCATCTCATATTAATCCTTACATTTGA 468 0.4359 MAAAGVIGGNSWSWMQMQLRRGRERKQERRVEICCSSSSSLTEYYETLRVQPGASQSEVKKAFRQLALQYHPDVCRESKCGVQFQQINQAYDVVMSNLRGESNVMEMYEACEDDAADIGEGMRGMNDPDWDLWEEWMGWEGAGIRDYSSHINPYI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181514g00008 155 PANTHER CO-CHAPERONE PROTEIN DJLA 35 153 - -
Stsc181514g00008 155 Pfam DnaJ domain 43 95 IPR001623 -
Stsc181514g00008 155 SMART dnaj_3 42 99 IPR001623 -
Stsc181514g00008 155 ProSiteProfiles dnaJ domain profile. 43 112 IPR001623 -
Stsc181514g00008 155 CDD DnaJ 43 93 IPR001623 -
Stsc181514g00008 155 PRINTS DnaJ domain signature 45 63 IPR001623 -
Stsc181514g00008 155 PRINTS DnaJ domain signature 63 78 IPR001623 -
Stsc181514g00008 155 PRINTS DnaJ domain signature 79 99 IPR001623 -
Stsc181514g00008 155 Gene3D DnaJ domain 16 102 IPR036869 -
Stsc181514g00008 155 SUPERFAMILY Chaperone J-domain 40 142 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181514g00008 Stsc-Chr181514 56428 57127 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181514g00008 33 94 C2H2 Transcription Factor Family AT1G74250 33.824 3.34e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181514g00008 - - gmx:100780336 212.231