Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181514g00003 ATGAAGAAAGGAGGTTGCCAGAAATCTTCAATTCCAGGGCAGCCTTATAGTTCGCTTTATTTCAATCCGCTGAATGAGAATGGGCGCACCCGCACCCGCACCCGAAGTTGCAGCGACTATGGCCTTGGCCGCTTAGCCTCAGAGTTTGAGGACCCCGGCAACAAGGAAAACAAGGCCGCCATGATCAATGGCTCTTCTCTGGCCTCACCTAAGATTAAGAAGCACTTGCCATCAAAGTCCACAGACACGATCTTGAAGCCGACTTCCCTCCAGTTGTGCATGCAGATGAACGAGCCTGAGAGGGCTTTTACTTGTTTCAATATCTGGGACTGGGACTGTGACTGTGACTACTCTGACTCCGACGCAGCTCCTGCTTCTTCCTGGTCCACTTTACCTAACCGCACTTTGATCTGCAGACCCTTGCCCATTGATATTGGAACATGTACATGCCTTATTCTGAAGGAGCCCTCTCCTCAAGGCCTCGGAACTCTCTATTCTCTTTATACCTATGAAGGTCAGGGACGCCAGAATAGGAAATTAGCAGTGGCCCATCACAAGCGCCGGAACGGCAAATCTCAATTCACAGTTGCTCAGAATGTAAAAGGACTCTTATGCAATTCCGATGATACCTTTCTTGGGACCATCACAGCTAACCTCTTGGGTTCGAAATACCATATCTGGGACCAGGGATATCCTCCTAATTCCCAATTACCTCTTGCTGTAGTGACGTATATACCCACAGTAGCAACATGTACCGGAAGTCACAGAAGCATGAGGGCATATATACCCAAGCATCAATCTATGTCACTCAAGAATATCACCCAGTTACAACATATTAAAGGGTTGCCCTTGGATTGGGAGGAGAAATTGGACAGAGTGCATCAACTATTCTCAAAGGTTCCACTCTACAACAAGATGTCAAAGCAATTTGAGCTTGACTTTAGAGATAAAGGAAGGACAGAACTTACAATCCAAAGATCCGTCAAAAATTTCCAGCTCACTTCAGAGGAGAATGGGAAGCAGACGATCCTGCAGCTAGGCAGGTTGGGAAAATCAAAATTCGTTATGGACTACAGGTATCCACTGACAGGGTACCAAGCTTTTTGCATATGTCTCGCTTCCATTGATGCAAAACTTTGCTGCACAGTGTAG 1152 0.467 MKKGGCQKSSIPGQPYSSLYFNPLNENGRTRTRTRSCSDYGLGRLASEFEDPGNKENKAAMINGSSLASPKIKKHLPSKSTDTILKPTSLQLCMQMNEPERAFTCFNIWDWDCDCDYSDSDAAPASSWSTLPNRTLICRPLPIDIGTCTCLILKEPSPQGLGTLYSLYTYEGQGRQNRKLAVAHHKRRNGKSQFTVAQNVKGLLCNSDDTFLGTITANLLGSKYHIWDQGYPPNSQLPLAVVTYIPTVATCTGSHRSMRAYIPKHQSMSLKNITQLQHIKGLPLDWEEKLDRVHQLFSKVPLYNKMSKQFELDFRDKGRTELTIQRSVKNFQLTSEENGKQTILQLGRLGKSKFVMDYRYPLTGYQAFCICLASIDAKLCCTV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181514g00003 383 PANTHER TUBBY-RELATED 121 380 - -
Stsc181514g00003 383 Pfam Tub family 139 376 IPR000007 -
Stsc181514g00003 383 SUPERFAMILY Tubby C-terminal domain-like 125 382 IPR025659 -
Stsc181514g00003 383 Gene3D Tubby Protein; Chain A 130 382 IPR025659 -
Stsc181514g00003 383 PRINTS Tubby superfamily signature 211 235 IPR000007 -
Stsc181514g00003 383 PRINTS Tubby superfamily signature 360 382 IPR000007 -
Stsc181514g00003 383 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Stsc181514g00003 383 PRINTS Tubby superfamily signature 339 358 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181514g00003 Stsc-Chr181514 29444 31488 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181514g00003 83 276 TUB Transcription Factor Family AT1G16070 54.976 7.90e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Stsc181514g00003 Tub 2.3e-40 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181514g00003 K19600 - cave:132188154 470.7