Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181514g00002 ATGTCTACTACTAGAAGAGGAGCGGGGTGTTCATGGAGTATATTGACATGGGTGGTGGCGGTTCTGGTAATATTGCCATCGCCAGGGAGGTGCATTGACATAACAAAGTTATTATCGCAGTACCCGACATTCAGCAGCTTCAGCAACTATCTGGCGCAGACACAGTTGGCAGGGGAGGTGAACACGAGGTCGGCCATAACTGTGTTGGCGGTGGATAATCGGGGGATGGCTCCTGTGTCGGGGAAATCCATGGACGTCATAAAGAAGGCTTTGAGCCTGCACGTCTTACTTGACTACTTTGACGTCCAGAAGTTGCAGCGCATTGGTAACGCCACCATCACCACCACCACTCTCTTCCAAACAACCGGCCAAGCCAAAAACATGCAGGGCTTCATGCACATTACCAACGTTGCCACTGGGGCCGTCATTTTTACCTCTGCCTCCGACCCAAAAGCTCCAGGCGCCAATCTCATCAAAGCTGTTGCCGCACAACCCTACAACATATCGGTGGTGCAAGTTAGCACCATCATAATGCCCCCCAGCATTTTCGGAGATGGAACTGCAAATAATGCAACTGCAAATGCCACCTCTCCAATAACTCAACCTGTCATTCCAGTTCCCGTTCCCGTTAATCCTCCTGCAGTTTCACCGCTTCCACCTAAATTCACCGTCCCAGTAGTCTCGCCTGTACCCGTCAAGTCTCCTGTCCCGGTAGTGTCGCCCGTGCCGGTGCCGGTGCTTGCACCGGTTCCAGTAAAGTCCCCCGTGCCTGTAGTGTCTCCAGTGCCGGTGGTCGCACCAGTCCCCGTGAAATCCCCGGTTCCGGTAACTTCTCCAGTGCCAGTAGCCTCACCAGTTCCCGTAGCATCGCCAGTTCCGGTAATTTCACCAGTGCCGGTAGTATCCCCAGTTCCCGTAGCATCGCCAGTGCCGGTAGTATCTCCAGTTCCGGTATTGTCACCCGTGCCGGTAGCATCGCCCGTTCCAATAGTGTCCCCAATTCCCGTAGCATCGCCGGTGCCAGTAGCATCGCCAGTTCCACTGGTGTCACCAGTGCCTGTAACTTCTCCTGTTCCAGTAGTGTCACCAGTGCCAGTAGCTTCGCCTGTTCCAGTAGTATCACCAGTCCCAGTTGCGGTACCTGAGCCTCAGGCAAGTCCTTCAGATGCGGGAAATAATGGTTCTAATTCGGCGGTGGCTTTTGGTGTGAATAGGGCTTTCTCAATTGCCCTTACTTTCTTGGCCATCTATCTCTCTCACTACACATGTTGA 1272 0.5354 MSTTRRGAGCSWSILTWVVAVLVILPSPGRCIDITKLLSQYPTFSSFSNYLAQTQLAGEVNTRSAITVLAVDNRGMAPVSGKSMDVIKKALSLHVLLDYFDVQKLQRIGNATITTTTLFQTTGQAKNMQGFMHITNVATGAVIFTSASDPKAPGANLIKAVAAQPYNISVVQVSTIIMPPSIFGDGTANNATANATSPITQPVIPVPVPVNPPAVSPLPPKFTVPVVSPVPVKSPVPVVSPVPVPVLAPVPVKSPVPVVSPVPVVAPVPVKSPVPVTSPVPVASPVPVASPVPVISPVPVVSPVPVASPVPVVSPVPVLSPVPVASPVPIVSPIPVASPVPVASPVPLVSPVPVTSPVPVVSPVPVASPVPVVSPVPVAVPEPQASPSDAGNNGSNSAVAFGVNRAFSIALTFLAIYLSHYTC 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181514g00002 423 FunFam Fasciclin-like arabinogalactan protein 3 31 177 - -
Stsc181514g00002 423 SUPERFAMILY FAS1 domain 38 180 IPR036378 -
Stsc181514g00002 423 Gene3D FAS1 domain 31 180 IPR036378 -
Stsc181514g00002 423 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 18 398 IPR033254 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181514g00002 Stsc-Chr181514 26301 27572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181514g00002 266 378 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT1G62970 33.898 6.15e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181514g00002 - - aip:107614627 301.982