Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181514g00001 ATGGCCCCCTCTACCTCGCGGGGTTCCAACTCCTCTTCCAATGGCCTCGTCACCGTTACCATCGCGGGAGGCGGCCGCCATGACCACGCGGACCCCGCTTCAAACAAGGACGACGAAGAAGACGAGCTAGTGGATTCCGATGATCCGTTTGACGTTACCCACACCAAGAACGCACCGCACCAGACGCTAAAGCGTTGGAGACAAGCTGCATTCGTTCTGAATGCTTCCAGGCGTTTTAGATATACTTTGGACTTGAAAAAGGAAGAGGAGAAAGAGCAAAAGAAAAGCATGATTAGAGCCCATGCACAAGTCATAAGAGCAGCTTTGCTTTTCAGATTAGCTGGGGAACGTGAACTAGTGACAAATACAGGCGTGCCATCCCTGGCTGCCACAACGCCTGACGGTGACTACGCAGTTGAACTCGAACAACTAGTTTCAATGTCTAAGGATCAGAATGTTGTTTCCTTGCAACACTATGGAGGGGTTAAGGGCTTAGCAGGTTTACTAAAATCAAATCCTGACAAAGGAATTAGTGGAACTGATACTGATCTATCAAAAAGGAAAATTGCATTTGGAACTAATACATATCCTCGGAAAAAGGGTAGAAGTTTCTGGAGGTTTCTTTGGGAATCTTGGCAAGATCTGACTCTTATAATATTGATTATAGCAGCTGTGGTGTCCTTGGCACTTGGAATAAAAACAGAGGGTTTGGAACATGGATGGTATGATGGGGGCAGCATTGCTTTCGCAGTTTTTCTTGTCATTATAGTTACAGCCGTTAGTGACTATCGGCAATCTCTCCAGTTTAAGAACTTGAACGCAGAAAAACAAAATATACAATTGGAGGTCATTAGAGGCGGTAGAACAATAAAATTATCCATTTTTGATATTGTTGTTGGTGATGTAGTACCCCTTAAAATAGGTGATCAGGTTCCTGCTGATGGAGTTTTAATCACTGGTCACTCACTTGCCATTGATGAATCGAGTATGACTGGTGAAAGCAAAATTGTTCAGAAGGATCACAAAACACCTTTTTTGATGTCCGGTTGCAAAGTAGCAGATGGAGTTGGTACTATGCTGGTAACCGCTGTTGGCATTAACACTGAATGGGGACTGTTGATGGCAAGTATCTCAGAGGATAACGGAGAAGAGACTCCGTTACAGGTACGTTTGAATGGAGTAGCAACATTTGTTGGCATAGTTGGGCTTACCGTCGCCGCTTCCGTTCTTGCTGTCCTGTTGGGAAGATACTTCTCTGGCAATACAAAAGATGAAGACGGGCAAGTGCAATTTGTAGCGGGAAAGACTAGTATTGATAATGTAGTGGACGGGGTCATCAAAATTTTCACCATTGCAGTTACAATTGTTGTTGTTGCTGTGCCTGAAGGTCTACCTTTGGCAGTTACCTTAACCCTGGCCTACTCTATGCGGAAAATGATGGCAGACAAGGCATTGGTTCGAAGGTTGTCAGCATGTGAAACTATGGGCTCCGCCACAACAATTTGCAGTGATAAGACTGGGACTTTGACCTTGAATCAGATGACTGTGGTTGAAGCATATGCCGGGAGGAAGAAACTAGATCCACCCGATGACTCGTCAAAGTTGCATCCCCAAGTTCTATCCCTCATAAATGAAGGCATTGCACAAAATACAACAGGAAATGTTTTTGTGCCTAAGGATGGTGGAGAGACAGAGATTTCAGGATCTCCAACAGAGAAGGCAATTCTTTATTGGGCCACGAAGTTGGGGATGAATTTTGAGCTTACCAGATCAAGTTCGACAATTCTCCACGTCTTCCCCTTCAATTCAGAGAAAAAGCGAGGTGGTGTTGCTCTAAAGCTGGGGGCGTCTGGAGTAGTACATATACATTGGAAAGGAGCTGCAGAGATAGTTGTTGGAGCCTGCACTCAATATCTTGATTCAAATGGTCAGTTGCAATCTATTGAAAAAGAAAAGGTATTCTTCAGGGAGGCTATTGAAGAGATGGCTGTGCAGAGCTTGCGCTGTGTTGCCATTGCGTACAGAGCATATGAATTGGACAAAGTTCCCTCCAAGCAAGAGGATTTGGACAAGTGGTCGTTGCCAGAAGAGGAGCTTGTTTTGCTTGCTATTGTTGGGATAAAGGATCCTTGCCGTCCCGGAGTGAAAGAAGCAGTAAGAGTATGCTCTCAAGCAGGTGTTAAGGTGCGCATGGTTACAGGGGACAACCTGAATACAGCAAAGGCAATAGCTTTGGAGTGCGGAATACTGAGTTCAAAGGAAGAGGCGGTGGAGCCAATTATAATTGAAGGAAAGACATTCCGTGAACTATCTGAAATAGAAAGGGAACAAGTTGCTAAGAAAATAACCGTGATGGGGAGGTCTTCTCCTAATGACAAGCTTTTGCTCGTGCAAGCGCTGCGTAAATTGGGTGAAGTTGTTGCTGTCACAGGGGATGGCACCAATGATGCTCCTGCACTTCATGAGGCAGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCTGATATTATAATTCTTGATGATAACTTTGCATCGGTAGTAAAGGTTGTTCGATGGGGTCGTTCAGTATATGCGAATATTCAAAAATTCATTCAGTTCCAGCTCACTGTTAACGTTGCTGCTCTTGTAATAAATGTTGTGGCCGCAGTATCTGCTGGTGAAGTTCCTTTAAATGCAGTACAGCTTTTGTGGGTGAATCTAATCATGGACACTCTTGGAGCACTTGCACTCGCTACCGAACCACCTACTGACAGCCTTATGCGCAGATCACCAGTTGGCCGAAGGGAATCTCTTATAACTAATGTCATGTGGAGGAACTTGATCGTACAGGCTACCTATCAAGTCACCATTCTTCTCGTTCTTAATTTCGGTTGGCAACGTATTAGTCTAGGTAAAGATCAAGATTCTAAATCTCACTCCTTACAAGTGAAGAACACTTTAATATTCAACACATTCGTCCTCTGCCAAATATTTAACGAGTTCAATGCTAGAAAAATAGATGAAATGAATGTCTTCAAGGGAGTGACTAAGAACCGTCTCTTCATGGGAATTGTTGGAGTGACGTTTGTGCTTCAGATACTGATCATCGAGTTCCTCGGAAAGTTCACCTCAACAGTGCGCCTTGACTGGAAACTCTGGTCGTTTTCTCTTGGTATTGGGATATTCAGCTGGCCTCTTGCTGTACTTGGAAAACTAATTCCAGTTCCGAAAACACCATGGTCACGGACCTTCAAGAAGCATATCAGGCGACTCAAGAAGTCTCGTAGTACTGCTCCTGCGCAACAACAATAG 3312 0.4432 MAPSTSRGSNSSSNGLVTVTIAGGGRHDHADPASNKDDEEDELVDSDDPFDVTHTKNAPHQTLKRWRQAAFVLNASRRFRYTLDLKKEEEKEQKKSMIRAHAQVIRAALLFRLAGERELVTNTGVPSLAATTPDGDYAVELEQLVSMSKDQNVVSLQHYGGVKGLAGLLKSNPDKGISGTDTDLSKRKIAFGTNTYPRKKGRSFWRFLWESWQDLTLIILIIAAVVSLALGIKTEGLEHGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFKNLNAEKQNIQLEVIRGGRTIKLSIFDIVVGDVVPLKIGDQVPADGVLITGHSLAIDESSMTGESKIVQKDHKTPFLMSGCKVADGVGTMLVTAVGINTEWGLLMASISEDNGEETPLQVRLNGVATFVGIVGLTVAASVLAVLLGRYFSGNTKDEDGQVQFVAGKTSIDNVVDGVIKIFTIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAYAGRKKLDPPDDSSKLHPQVLSLINEGIAQNTTGNVFVPKDGGETEISGSPTEKAILYWATKLGMNFELTRSSSTILHVFPFNSEKKRGGVALKLGASGVVHIHWKGAAEIVVGACTQYLDSNGQLQSIEKEKVFFREAIEEMAVQSLRCVAIAYRAYELDKVPSKQEDLDKWSLPEEELVLLAIVGIKDPCRPGVKEAVRVCSQAGVKVRMVTGDNLNTAKAIALECGILSSKEEAVEPIIIEGKTFRELSEIEREQVAKKITVMGRSSPNDKLLLVQALRKLGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSAGEVPLNAVQLLWVNLIMDTLGALALATEPPTDSLMRRSPVGRRESLITNVMWRNLIVQATYQVTILLVLNFGWQRISLGKDQDSKSHSLQVKNTLIFNTFVLCQIFNEFNARKIDEMNVFKGVTKNRLFMGIVGVTFVLQILIIEFLGKFTSTVRLDWKLWSFSLGIGIFSWPLAVLGKLIPVPKTPWSRTFKKHIRRLKKSRSTAPAQQQ 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181514g00001 1103 Gene3D - 60 112 - -
Stsc181514g00001 1103 PRINTS P-type cation-transporting ATPase superfamily signature 834 846 - -
Stsc181514g00001 1103 PRINTS P-type cation-transporting ATPase superfamily signature 502 516 - -
Stsc181514g00001 1103 PRINTS P-type cation-transporting ATPase superfamily signature 326 340 - -
Stsc181514g00001 1103 PRINTS P-type cation-transporting ATPase superfamily signature 703 714 - -
Stsc181514g00001 1103 PRINTS P-type cation-transporting ATPase superfamily signature 725 735 - -
Stsc181514g00001 1103 PRINTS P-type cation-transporting ATPase superfamily signature 810 829 - -
Stsc181514g00001 1103 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 90 IPR024750 GO:0005516
Stsc181514g00001 1103 Gene3D - 512 710 IPR023299 GO:0000166
Stsc181514g00001 1103 Gene3D - 499 855 IPR023214 -
Stsc181514g00001 1103 NCBIfam HAD-IC family P-type ATPase 443 527 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181514g00001 1103 NCBIfam HAD-IC family P-type ATPase 777 890 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc181514g00001 1103 MobiDBLite consensus disorder prediction 1 19 - -
Stsc181514g00001 1103 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 509 707 IPR023299 GO:0000166
Stsc181514g00001 1103 Gene3D - 181 378 - -
Stsc181514g00001 1103 SUPERFAMILY HAD-like 500 915 IPR036412 -
Stsc181514g00001 1103 FunFam Calcium-transporting ATPase 703 855 - -
Stsc181514g00001 1103 ProSitePatterns E1-E2 ATPases phosphorylation site. 504 510 IPR018303 -
Stsc181514g00001 1103 NCBIfam calcium-translocating P-type ATPase, PMCA-type 148 1075 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Stsc181514g00001 1103 CDD P-type_ATPase_Ca_PMCA-like 184 943 - -
Stsc181514g00001 1103 Gene3D - 210 1062 - -
Stsc181514g00001 1103 FunFam Calcium-transporting ATPase 9 plasma membrane-type 356 526 - -
Stsc181514g00001 1103 PANTHER CATION TRANSPORTING ATPASE 103 1075 - -
Stsc181514g00001 1103 PRINTS Sodium/potassium-transporting ATPase signature 495 516 - -
Stsc181514g00001 1103 PRINTS Sodium/potassium-transporting ATPase signature 245 265 - -
Stsc181514g00001 1103 PRINTS Sodium/potassium-transporting ATPase signature 622 640 - -
Stsc181514g00001 1103 Pfam E1-E2 ATPase 279 480 - -
Stsc181514g00001 1103 SFLD Haloacid Dehalogenase 484 862 - -
Stsc181514g00001 1103 FunFam Calcium-transporting ATPase 257 378 - -
Stsc181514g00001 1103 MobiDBLite consensus disorder prediction 1 61 - -
Stsc181514g00001 1103 FunFam Calcium-transporting ATPase 210 267 - -
Stsc181514g00001 1103 Pfam haloacid dehalogenase-like hydrolase 499 824 - -
Stsc181514g00001 1103 SFLD p-type atpase 484 862 IPR044492 -
Stsc181514g00001 1103 FunFam Calcium-transporting ATPase 58 114 - -
Stsc181514g00001 1103 FunFam Calcium-transporting ATPase 827 1077 - -
Stsc181514g00001 1103 FunFam Calcium-transporting ATPase 512 710 - -
Stsc181514g00001 1103 SUPERFAMILY Calcium ATPase, transduction domain A 280 375 IPR008250 -
Stsc181514g00001 1103 Pfam Cation transporting ATPase, C-terminus 895 1073 IPR006068 -
Stsc181514g00001 1103 SMART Cation_ATPase_N_a_2 161 232 IPR004014 -
Stsc181514g00001 1103 SUPERFAMILY Calcium ATPase, transmembrane domain M 158 1076 IPR023298 -
Stsc181514g00001 1103 Pfam Cation transporter/ATPase, N-terminus 158 227 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181514g00001 Stsc-Chr181514 1533 9166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181514g00001 9 1096 Primary Pumps ATPases AT3G21180 74.725 0.0 1631
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181514g00001 K01537 - gmx:100817367 1729.92