Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181511g00003 ATGGGCTGCATCTACTCCCGCGTTTGCGTCGGCGACAACTGCGCTGGTGGCGCCGCCGCCAGTATCAACGGCGAAGCAATCGCGCGCCCTCTTCCTCGGACTTCATCGTCGGAGCCAGACGAATTCACTGCCGCCACCGCCGCCTCGCCGGACGGCGATTTCCAAGTGCAGAATCAGCTGAGCTTGACGCGGGACCCGGAGGCCGGAATCCGGAGGCTCGCTAGGGTTTCGTCGCAGTTTCTTCCGCCGGAAGGTTGTAAAGTGGCGAAGGTGCCTTCGTTCAGTTACGAGCTTCGATACTCGTTTCTCTCACAGAGAGGTTACTACCCTGACGCACTCGACAAGGCGAACCAAGACAGCTTCTGTATCCACACGCCGTTCGGTTCGAGTCCGAATGACCATTTCTTTGGTGTGTTTGATGGACATGGTGAGTTCGGTGCGCAGTGTTCGCAGTTCGTGAAGCAGAAGCTCTGTGAGAATCTTCTTCGGAGTCCGAAATTCCAAAACGACGCCGTTGAGGCTTGTCATAGTGCTTTCCTGGCGACGAATTCGCAGCTGCACAGTGATGTGTTGGATGACAGCATGAGCGGGACGACGGCGATCACGGTGCTGGTGAGAGGGAGGACTATAATCGTGGCGAATTCAGGGGATTCGAGGGCGGTGATCGGAGAGAGGAGAGGGGAGGATCTTGTGGCGGTGGATTTATCGTTGGATCAGACACCGTTTAGGGCTGATGAGCTGGAGAGAGTGAAGATGTGTGGTGCGAGGGTTTTGACTTTGGATCAAATTGAGGGTTTGAAGAATCCTGAAGTTCAGTGTTGGGGAAATGAAGAAGGTGATGATGATGGGGACCCACCTAGGTTGTGGGTCCCAAATGGGATGTACCCTGGGACTGCATTCACAAGGAGCATTGGGGATTCAATTGCAGAGACTATTGGTGTTGTTGCTAACCCTGAGATTGTTGTTTTCGAACTCACCAAGGATCATCCTTTCTTTGTGCTTGCAAGTGATGGTGTATTTGAATTCATCTCTAGCCAAACGGTAGTTGATATGGTTGCAAAGTTCAAAGATCCTCGTGATGCTTGTGCTGCAATAGTGGCTGAATCTTATCGGCTTTGGCTACAGTATGAAACTCGTACGGATGATATCACAATCATCATTGTGCATATAAACGGGCTAACTGAACCTGGTGTTGGTCGGGAAAGAACATATGGAGAATCCTTACAAACTCCAGTTCCTCAAGTTGTAGAGGTGAAAGGTTCAGAATCTCCATCTACCCTAGATTGGAACTCTAAGAACCAACGGGTAAGGCATGACTTGTCAAGGGCACGCCTCCGAGCAATTGAAAATTCCCTGGAGAATGGGCAAGCTTGGGTTCCTCCATCTTCAGCACATAGGAAGACATGGGAGGAAGAAGCACACATAGAACGAGCAATGCATGATCATTTTCTCTTCCGAAAAGTTACTGCTTCTCAATGTAATGTTCTATTGGATTCCATGGAAAGAGTTGAAGTGCAACCTGGTGAGATTGTAGTCAAACAGGGCAGTGAAGGGGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAAGTCTTGGCAACTCAGGAAGAAAAGGATGGGGAAGTAACCAAGGTTTTACAGCGTTACACATCGGAAAAACTATCATGCTTTGGAGAGCTTGCTCTAATGTACAATAAACCACTCCAAGCTTCTGTACGTGCTGTAACTAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTCTAATGTCAGAATTCTCGAACTTGTCATCCTTGAAGTTGCTTCGATCTGTAGATCTCCTGTCAAGATTGTCAATTTTACAACTGAGTCAGATTTCTGACTCCCTCTCTGAAGTCTCCTACGCAAGTGGTCAGACAATAATTGATTGTAGTGAAGTCCGTGGATTGTACATAATTCAGAAGGGACAAGTGAAAATCACTTTTGATGCAGATTTATTGATGAATCCAAATGTTTGTAGCCTCTATCCTGATTTCGAAAATGTGAATGATGATGCACAGAGCAGAAGAGAACTGTCAATAGAGAAGCAAGAGGGAAGATATTTTGGTGAATGGTCCCTTCTTGGGGAAAAAGTTGGTCCCTTAAGTGCTGTTGCTGTGGGTGACGTTGTATGTGCTGTATTAACAAAAGAGAAATTTGAATCTGTTGTTGGTTCCATACCAAAGATTTCTCAGGAGGATCGCAAGTCAAGACATAATTCCGAAGAGTTTACAAGAAATGTTGACTTTTCATCCCTCGGAAAAGTACGGCTCTCAGATTTGGAGTGGATAAAGAGTGTCTATTCTACCGACTGCTCTGATATTGGGCTTGTAAAGTTTGGAGAAGCAGAAAATTTGCTTACATTGAAGAGATTTTCCAAGCCAAAAGTGAAAAGGCTGGGAAAAGAAGCACAAGTCTTGAAAGAGAAGGACTTGATTAAGGGTGTGAGCTATTCAGCATGTGTACCACAGGTTTTATGCACTTCTGCTGACCGCATATATGCTGGAATAGTGTTAAATACACGCCTTGCTTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTGGTGAATCGGCCGCACAGTTTTGTGCTGCTTCTGTTGTTATTGCTTTAGAAGATTTGCACAAGAATGGTGTTCTATACCGAGGAGTGTCACCTGATGTTGTGATGTTGGACCAAACCGGGCAGATACAGCTGGTCGACTTCAGATTTGGGAAGAAGCTTGCTGGTGAAAGAACATTCACAATTTGTGGGATGGCAGATTCACTAGCTCCAGAGATTGTGTTGGGAAAAGGCCACAGTTTCCCTGCTGACTGGTGGGCATTAGGAGTTTTGATATATTTTATGCTACGAGGTGAAATGCCTTTTGGATCATGGAGGGAAAACGAGCTTGATACGGTTGCCAAAATTGCGAAACGGAAGCTACATCTTCCAGATGAATTCAACCCGGAAGCTGTTGATCTCATATCCAAGTTACTTGATGTGGAAGAAACCACTAGACTTGGTAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATGGTGTTAAATGGGAAGGGATTCGCCACCTTACTTTTCCCGTTCCTCAGGAAATCGTTTCTCGTGTTACACAATACTTGGAAGTTCACTCTGAGGATTGCACTGGTTCTCTAGGTTCCCCATTACAGGAGGTAGAAGAACTCAATGTACCTGAATGGCTTGAGGACTGGTAA 3246 0.4615 MGCIYSRVCVGDNCAGGAAASINGEAIARPLPRTSSSEPDEFTAATAASPDGDFQVQNQLSLTRDPEAGIRRLARVSSQFLPPEGCKVAKVPSFSYELRYSFLSQRGYYPDALDKANQDSFCIHTPFGSSPNDHFFGVFDGHGEFGAQCSQFVKQKLCENLLRSPKFQNDAVEACHSAFLATNSQLHSDVLDDSMSGTTAITVLVRGRTIIVANSGDSRAVIGERRGEDLVAVDLSLDQTPFRADELERVKMCGARVLTLDQIEGLKNPEVQCWGNEEGDDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTKDHPFFVLASDGVFEFISSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITIIIVHINGLTEPGVGRERTYGESLQTPVPQVVEVKGSESPSTLDWNSKNQRVRHDLSRARLRAIENSLENGQAWVPPSSAHRKTWEEEAHIERAMHDHFLFRKVTASQCNVLLDSMERVEVQPGEIVVKQGSEGDCFYVVGSGEFEVLATQEEKDGEVTKVLQRYTSEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSYASGQTIIDCSEVRGLYIIQKGQVKITFDADLLMNPNVCSLYPDFENVNDDAQSRRELSIEKQEGRYFGEWSLLGEKVGPLSAVAVGDVVCAVLTKEKFESVVGSIPKISQEDRKSRHNSEEFTRNVDFSSLGKVRLSDLEWIKSVYSTDCSDIGLVKFGEAENLLTLKRFSKPKVKRLGKEAQVLKEKDLIKGVSYSACVPQVLCTSADRIYAGIVLNTRLACPLSSILSSPFGESAAQFCAASVVIALEDLHKNGVLYRGVSPDVVMLDQTGQIQLVDFRFGKKLAGERTFTICGMADSLAPEIVLGKGHSFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPDEFNPEAVDLISKLLDVEETTRLGSQGPDSVKSHPWFNGVKWEGIRHLTFPVPQEIVSRVTQYLEVHSEDCTGSLGSPLQEVEELNVPEWLEDW 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181511g00003 1081 SUPERFAMILY cAMP-binding domain-like 602 739 IPR018490 -
Stsc181511g00003 1081 Gene3D Transferase(Phosphotransferase) domain 1 855 1039 - -
Stsc181511g00003 1081 CDD CAP_ED 484 593 IPR000595 -
Stsc181511g00003 1081 SUPERFAMILY cAMP-binding domain-like 466 594 IPR018490 -
Stsc181511g00003 1081 SMART serkin_6 705 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181511g00003 1081 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 458 598 - -
Stsc181511g00003 1081 PRINTS cAMP-dependent protein kinase signature 555 564 - -
Stsc181511g00003 1081 PRINTS cAMP-dependent protein kinase signature 729 741 - -
Stsc181511g00003 1081 PRINTS cAMP-dependent protein kinase signature 520 534 - -
Stsc181511g00003 1081 PRINTS cAMP-dependent protein kinase signature 505 519 - -
Stsc181511g00003 1081 CDD PP2Cc 115 390 IPR001932 -
Stsc181511g00003 1081 Gene3D Phosphorylase Kinase; domain 1 768 854 - -
Stsc181511g00003 1081 SMART PP2C_4 100 388 IPR001932 -
Stsc181511g00003 1081 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 94 392 - -
Stsc181511g00003 1081 Gene3D Jelly Rolls 459 599 IPR014710 -
Stsc181511g00003 1081 ProSiteProfiles cAMP/cGMP binding motif profile. 610 750 IPR000595 -
Stsc181511g00003 1081 Gene3D Jelly Rolls 600 754 IPR014710 -
Stsc181511g00003 1081 SMART cnmp_10 610 748 IPR000595 -
Stsc181511g00003 1081 SMART cnmp_10 484 607 IPR000595 -
Stsc181511g00003 1081 Pfam Protein phosphatase 2C 125 369 IPR001932 -
Stsc181511g00003 1081 CDD CAP_ED 610 742 IPR000595 -
Stsc181511g00003 1081 SUPERFAMILY Protein kinase-like (PK-like) 791 1053 IPR011009 -
Stsc181511g00003 1081 ProSitePatterns PPM-type phosphatase domain signature. 135 143 IPR000222 GO:0043169
Stsc181511g00003 1081 ProSiteProfiles cAMP/cGMP binding motif profile. 484 593 IPR000595 -
Stsc181511g00003 1081 ProSiteProfiles Protein kinase domain profile. 751 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181511g00003 1081 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 461 1041 - -
Stsc181511g00003 1081 Pfam Protein kinase domain 793 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181511g00003 1081 Pfam Cyclic nucleotide-binding domain 629 733 IPR000595 -
Stsc181511g00003 1081 Pfam Cyclic nucleotide-binding domain 503 594 IPR000595 -
Stsc181511g00003 1081 SUPERFAMILY PP2C-like 82 392 IPR036457 -
Stsc181511g00003 1081 ProSiteProfiles PPM-type phosphatase domain profile. 99 390 IPR001932 -
Stsc181511g00003 1081 Gene3D - 93 391 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181511g00003 Stsc-Chr181511 19906 28187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181511g00003 1 1081 PP2C-type Phosphatase Gene Family AT2G20050 67.092 0.0 1456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Stsc181511g00003 PP2C 1.6e-35 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181511g00003 - - gmx:100799821 1762.66