Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181511g00002 ATGAAAAAGAACAATAAAAAACATGATTCCATCATTACCCTCTTGTTACTAGTTCTAATTTCTTTGTTAATCCACCATGTTAGAGCAAAAACTCCATCTTCTTCTGATTCTAATTCTTCTTCATCAGAAGATGCTGTCTCAAATTTCCAACCAAGCCTTGTTGTTGTGATAGGAATCCTTGGCCTAATGTTCTCACTAACATTTGTTCTTCTTGTTTTTGCCAAATTCTGCCAAAGAGGAGCACTTGTCCCTCTTCTCCACACAGATCAAGACAATCAATTGCTATCAACAAGGTCTAGAAGATTCTCAGGAATTGATAAGAATGTTATTGAGTCATTACCCTTCTTCAGATTCTCTTCCCTGAGAGGATCAAAGGAAGGTTTGGAATGCTCAGTGTGCTTATCCAAGTTCGAAGATGTCGAAATCCTCAGACTCTTGCCAAAATGTAAGCATGCTTTTCACATTGATTGCATAGATCATTGGCTTGAGAAGCACGCAAGCTGCCCTCTCTGCAGGCACAAGGTCAATCCGGCCGACGAATCCATTTTCGCCTATTCAAACAGCTTAAGGAGGCTTGTTAACAATAATTCGACCGCGGCCGAAGACTCTAACATGGAGCTTTTCGTCCAAAGAGAGGAGGAGGAGGAAGAAGCAGAAGCAGAACGTGGAGCCTTTCGCGGTTCAAAGAGATTTAGTATTGGAAGTATAAGCCTCCGGAGATTGTTTTCGAAGGATGTTAAAGAAGAGGAGTTGCCTATACAGAACAGAACAGATTGCGAAAACAAGGAGTATCACAAACACAAACACCGGATTACCGTGTCCGATGTTGTGTTCAAGAATAGGTGGAGCAATGTTAGCTCTTCAGATATATTGTTCTTGAACTCGGAGTTGCTTAACGAGGTTTCGAGCTCTCGGTTCGACAATGATGTTGTGATGAAGATCAATGCAAATGCAAATGCAAATGAAAGTGATCATGGAATCTTGAACCTCAAGGAAGAGATGGAGAGGAAGATTTCATTTGAGAGCAAAATTGGTGCAATAAACAAGGTTCCTTCTACTTCTTCTTCTTCTTCTACAAAGCATCATTATTTGATGAATCAACACAGTGAGAAAAGATCAATGTCTGAGATCACAGGAGTTTCAAGATTTGGTGAATTAGGCATGATGATGAAACAGAACAGGGCATTTAATAAGGATTCTTCTTTGGTTGATGAGAAGAATGGTAGTAACAATAACAATAATAATATGAAAGAAGAAAGGATGAGGCAGCTTTGGTTTCCAATTGCAAGAAGAACAGTTCAATGGTTTGTGAATAGAGAAAGAAGATCTCATAATCAACAATCACATTATAATAATAATAATAATAAGCAAAATTCATTAGATGTATAG 1389 0.3866 MKKNNKKHDSIITLLLLVLISLLIHHVRAKTPSSSDSNSSSSEDAVSNFQPSLVVVIGILGLMFSLTFVLLVFAKFCQRGALVPLLHTDQDNQLLSTRSRRFSGIDKNVIESLPFFRFSSLRGSKEGLECSVCLSKFEDVEILRLLPKCKHAFHIDCIDHWLEKHASCPLCRHKVNPADESIFAYSNSLRRLVNNNSTAAEDSNMELFVQREEEEEEAEAERGAFRGSKRFSIGSISLRRLFSKDVKEEELPIQNRTDCENKEYHKHKHRITVSDVVFKNRWSNVSSSDILFLNSELLNEVSSSRFDNDVVMKINANANANESDHGILNLKEEMERKISFESKIGAINKVPSTSSSSSTKHHYLMNQHSEKRSMSEITGVSRFGELGMMMKQNRAFNKDSSLVDEKNGSNNNNNNMKEERMRQLWFPIARRTVQWFVNRERRSHNQQSHYNNNNNKQNSLDV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181511g00002 462 MobiDBLite consensus disorder prediction 447 462 - -
Stsc181511g00002 462 Pfam Ring finger domain 129 172 IPR001841 -
Stsc181511g00002 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 181 IPR013083 -
Stsc181511g00002 462 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 27 441 - -
Stsc181511g00002 462 MobiDBLite consensus disorder prediction 399 418 - -
Stsc181511g00002 462 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Stsc181511g00002 462 FunFam RING-H2 finger protein ATL43 105 179 - -
Stsc181511g00002 462 CDD RING-H2_EL5-like 129 172 - -
Stsc181511g00002 462 SMART ring_2 130 171 IPR001841 -
Stsc181511g00002 462 MobiDBLite consensus disorder prediction 442 462 - -
Stsc181511g00002 462 SUPERFAMILY RING/U-box 109 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181511g00002 Stsc-Chr181511 13499 14924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181511g00002 15 449 C3H Transcription Factor Family AT4G28890 45.759 2.64e-105 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181511g00002 K10664 - gmx:100803207 447.973