Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181510g00003 ATGGAGGAAGTGGACCTTGACGGTGGCGGTGGCAGTGGTCGCAAGTATCGGCCTGTGCTGGACAGCGATCGTGCGGTGCTTGAGATGTCTTCAATGGATCCTGGATCTTCCTCTGCTTCCTCTTCTTCTCAACCTCCTCCTAATCTCAGAAAAATAAACGTGGGTAATGGTGCTACTGAGGCTTCTAATGCTAAAGAAGGGAATAACTCTCCTAGTCACCCACAGCCTAATGGATCCCATACAGAATCAAAGCTTGAGCTGTTTGGTTTTGATTCCCTTGTCAATATACTTGGTCTTAAAAGCATGACTAGTGAGCAAGCTGTGCAACCGTCTAGTCCAAGAGAAGGTGAAGATATTTCTATCACTGTTGGGGAGCCAAAGCCTGCTGCTCCCAAGCTGGGTACAATGATGGGTGTATTCATTCCATGCATACAAAGCATTTTGGGCATCATCTACTACATTCGTTTCTCTTGGATTGTTGGAATGGCTGGCATAGGAGAGTCATTTCTGCTTGTTGCTATATGTGGCTTGTGTACTTTCCTTACTTCAATATCATTGAGTGCCATTGCAACTAATGGTGCTATGAAGGGAGGGGGACCGTACTATCTAATAGGGCGTGCCCTTGGTCCAGAAGTTGGAGTTAGCATTGGTATATGTTTCTTCCTTGGGAATGCTGTTGCTGGAGCACTTTACGTATTGGGAGCTGTGGAAACATTTTTGAAAGCAGTTCCTGCTGCTGGGATTTTTAGAGAGACTGTCAGCCATGTTAATGGTACTGCAGTGACACCAATAGAAGCTCCAAGTTCTCATGATCTGCAAATTTATGGGATTGTTGTGACCATTCTTTTATGCTTTATTGTATTTGGAGGAGTGAAGATGATAAATCGGGTTGCACCTGCATTTCTCATTCCTGTTTTATTCTCAGTCATCTGCATATTCTTGGGAATGTTTGTGGCAAGGGAGGATAAACCTACAGAGGGATTTACTGGTTTGAGTTGGACGACACTTAAAGATAATTGGAGTTCAGATTATCAAAAAACTAATGATGCTGGAATCCCAGAACCTGATGGCAATGTAAGCTGGAATTTCAATTCATTAGTAGGCCTCTTTTTCCCAGCTGTGACAGGAATAATGGCAGGTTCTAATAGATCAGCCTCTCTAAAAGATACTCAGAAATCAATTCCTTTCGGGACATTATCTGCAACACTTATTACTACGTCTCTCTATTTTATTTCTGTGTTATTTTTTGGCGCCATTGCCACCAGAGAGAAGCTTTTAACAGACAGGCTACTAACGGCTACAGTTGCCTGGCCTTTTCCTTCATTAATTAAAATTGGGATTATTCTTTCAACTTTGGGTGCTGCTCTTCAGAGTCTGACCGGTGCCCCACGTCTGCTTGCAGCAATAGCCAATGATGATATTTTACCTGTTCTGCGCTACTTTAAAGTTGCAGAGGGCAGTGAGCCTTATGCTGCTACCCTTTTCACTGCTGTCCTATGTGCTGTGTGTGTCGTTATTGGGAATCTGGATCTCATCACTCCAACTATAACTATGTTTTTCCTTCTATGTTATACGGGTGTGAACTTGTCCTGCTTCCTTCTTGATCTTCTAGATGCTCCTAGTTGGCGACCTCGTTGGAAATTTCATCATTGGTTTCTCTCTCTTGTTGGAGCATTACTTTGTGTTGTGATTATGTTCCTGATCTCATGGTCATTCACTGTGGTGGCTTTGGCCCTTGCAAGTCTTATATATAAGTATGTGGGCCTCAAAGGAAAGGCTGGGGACTGGGGAGATGGTTTCAAAAGTGCATATTTCCAACTAGCACTTCGGAGCCTTCGATCACTAGGAGAAAACCAAGTACACCCAAAGAATTGGTATCCAATTCCACTAGTATTTTGCCGGCCCTGGGGTCAACTACCAGAAAATGTTCCATGTCATCCCAAACTAGCAGATTTTGCTAACTGTATGAAGAAGAAAGGTCGAGGAATGTCTATATTTGTCTCTATACTGGATGGGGACTACCATGAATGTGCTGAAGATGCCAAAACTGCTTGTAAACAGCTTAGTACCTACATTAATTACAAGAATTGTGAAGGTGTGGCTGAGATTGTTGTAGCCCCTAATATGTCTGAAGGCTTTCGTGGCATCATTCAGACAATGGGCCTTGGGAATCTCAAGCCAAACATTGTGGTGATGCGCTACCCAGAGATCTGGCGTCGGGAGAACTTAACAGAAATCCCCAAGACATTTGTTGGCATAATTAACGACTGCATTGTTGCAAACAAGGCAGTAGTCATAGTGAAGGGTCTTGATGAGTGGCCCAATGAGTACCAGAAGCAGTATGGTACGATTGACCTCTACTGGATTGTGAGAGATGGTGGTCTCATGCTGCTGCTCTCTCAGCTGCTTCTTACCAAGGATAGCTTTGAGAGTTGCAAAATTCAGGTTTTCTGCATTGCAGAAGAGGATGCAGATGCAGAAGTTCTGAAAGCTGATGTGAGGAAATTCCTTTATGATCTTCGGATGCAAGCAGAGGTCTTTGTCATTCCCATTTCTTCACAAGAAAGTGGTGGGTCTCCTCAGGATGAATCAATGGATGCATTTAAAGGTGCCCAACAAAGAATTGATGATTATCTAAACAAAATGAAGGAAGTAGCAAGGAAAGATGGCACCCCTCTAATGGCAGATGGTAAGCGCGCCGTTGTGAATGAGCAGCAGGTTGAGAAGTTTCTCTTCACAACGCTTAAGCTCAATTCAATAATGTTGAGATACTCAAGAATGGCTGCTGTTGTTTTGGTAAGTTTGCCTCCACCTCCACTGAACCACCCGGCATATTTCTATATGGAGTATATGGATATGTTGCTGGAAAATATGCCAAGGATTTTAATTGTAAGGGGATACCGTAGAGACGTTGTAACTCTATTCACATAG 2931 0.4333 MEEVDLDGGGGSGRKYRPVLDSDRAVLEMSSMDPGSSSASSSSQPPPNLRKINVGNGATEASNAKEGNNSPSHPQPNGSHTESKLELFGFDSLVNILGLKSMTSEQAVQPSSPREGEDISITVGEPKPAAPKLGTMMGVFIPCIQSILGIIYYIRFSWIVGMAGIGESFLLVAICGLCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGICFFLGNAVAGALYVLGAVETFLKAVPAAGIFRETVSHVNGTAVTPIEAPSSHDLQIYGIVVTILLCFIVFGGVKMINRVAPAFLIPVLFSVICIFLGMFVAREDKPTEGFTGLSWTTLKDNWSSDYQKTNDAGIPEPDGNVSWNFNSLVGLFFPAVTGIMAGSNRSASLKDTQKSIPFGTLSATLITTSLYFISVLFFGAIATREKLLTDRLLTATVAWPFPSLIKIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLRYFKVAEGSEPYAATLFTAVLCAVCVVIGNLDLITPTITMFFLLCYTGVNLSCFLLDLLDAPSWRPRWKFHHWFLSLVGALLCVVIMFLISWSFTVVALALASLIYKYVGLKGKAGDWGDGFKSAYFQLALRSLRSLGENQVHPKNWYPIPLVFCRPWGQLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLSTYINYKNCEGVAEIVVAPNMSEGFRGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPKTFVGIINDCIVANKAVVIVKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFESCKIQVFCIAEEDADAEVLKADVRKFLYDLRMQAEVFVIPISSQESGGSPQDESMDAFKGAQQRIDDYLNKMKEVARKDGTPLMADGKRAVVNEQQVEKFLFTTLKLNSIMLRYSRMAAVVLVSLPPPPLNHPAYFYMEYMDMLLENMPRILIVRGYRRDVVTLFT 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181510g00003 976 PANTHER SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS 77 973 IPR004842 GO:0006811|GO:0015377|GO:0016020
Stsc181510g00003 976 NCBIfam K-Cl cotransporter 68 976 IPR004842 GO:0006811|GO:0015377|GO:0016020
Stsc181510g00003 976 Gene3D Amino acid/polyamine transporter I 131 594 - -
Stsc181510g00003 976 MobiDBLite consensus disorder prediction 31 82 - -
Stsc181510g00003 976 MobiDBLite consensus disorder prediction 1 82 - -
Stsc181510g00003 976 FunFam Cation-chloride cotransporter 1 132 595 - -
Stsc181510g00003 976 Pfam Solute carrier family 12 779 975 IPR018491 GO:0006811|GO:0016020|GO:0022857
Stsc181510g00003 976 Pfam Solute carrier family 12 647 768 IPR018491 GO:0006811|GO:0016020|GO:0022857
Stsc181510g00003 976 Pfam Amino acid permease 138 608 IPR004841 GO:0016020|GO:0055085
Stsc181510g00003 976 Coils Coil 868 888 - -
Stsc181510g00003 976 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181510g00003 Stsc-Chr181510 18041 31019 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181510g00003 133 976 Inorganic Solute Cotransporters AT1G30450 82.763 0.0 1438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181510g00003 K14427 - gmx:100795205 1607.42