Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181508g00006 ATGGGAAGACCTCCTTGCTGTGACAAAACCAATGTGAAGAGAGGTCTTTGGACTCCTGAGGAAGATGCTAAGATACTTGCTTATGTCTCCAACTATGGAATTGGAAACTGGACCTTGGTTCCTAAGAAAGCAGAAGAAGAGCTCATTATTAACCTTCATGCTGCTATAGGAAGCAGATGGTCATTAATTGCGAAACGGCTACCTGGAAGAACAGACAATGATGTGAAGAACTACTGGAACACAAAGCTGAGGAAGAAGCTTATGAACATGGGAATCGATCCGGTAACTCATAAGCCGGTATCACAAGTCCTTTCTGACTTAGGAAGCATCAATGGACTCCCAAGCACAGGCAATTTGATGAACAATATGTTACCAACCAGAACAGAACCGTCCCCGGCCGATTACTCATTAGTAACTGCCAATGCCGGCATCAAAACCAACCCAATGGTTGATCAGGTGCATGAAGAACAAGCTCAATTTTGGGAAAATCAGGTTCAGTACCAACCAAATGTAGTAGTCTTCAGTGAAACTGCATCCTCAAGTTCTTCATCATCATCTTCCAATCTCACTCAATTGAGCTCTCCTCAGCAGTCATATACCTTTCAAAATTCCCAAATTACTCCTCCCAGTTCGGCCTCATTCGACTGGAGTGACTTTCTTCATGGTGACTCCTTTGTGTGGTCGGAGATGCAGCAGAGTGATCTGCAGAGGGCTATGTCATCCGCGGCCGCGTGCGAGGCCTCTGGAGCTGTTGCTTGCGGCGCAAGTCATTCAAATTCTGGGGATTCATTTGTGGAGGGTATTTTGGACAGGGACAGTGAAATAAGGGCAGCATTCCCTGATCTTTTGGATGATGCTTTTGATTACTAA 870 0.4529 MGRPPCCDKTNVKRGLWTPEEDAKILAYVSNYGIGNWTLVPKKAEEELIINLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMNMGIDPVTHKPVSQVLSDLGSINGLPSTGNLMNNMLPTRTEPSPADYSLVTANAGIKTNPMVDQVHEEQAQFWENQVQYQPNVVVFSETASSSSSSSSSNLTQLSSPQQSYTFQNSQITPPSSASFDWSDFLHGDSFVWSEMQQSDLQRAMSSAAACEASGAVACGASHSNSGDSFVEGILDRDSEIRAAFPDLLDDAFDY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181508g00006 289 ProSiteProfiles Myb-like domain profile. 9 83 IPR001005 -
Stsc181508g00006 289 FunFam transcription factor MYB80 41 100 - -
Stsc181508g00006 289 Gene3D - 44 102 - -
Stsc181508g00006 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 42 IPR017930 -
Stsc181508g00006 289 Gene3D - 7 43 - -
Stsc181508g00006 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 87 IPR017930 -
Stsc181508g00006 289 MobiDBLite consensus disorder prediction 181 206 - -
Stsc181508g00006 289 Pfam Myb-like DNA-binding domain 14 43 IPR001005 -
Stsc181508g00006 289 Pfam Myb-like DNA-binding domain 44 81 IPR001005 -
Stsc181508g00006 289 SUPERFAMILY Homeodomain-like 11 79 IPR009057 -
Stsc181508g00006 289 CDD SANT 17 83 IPR001005 -
Stsc181508g00006 289 PANTHER F14D16.11-RELATED 1 289 - -
Stsc181508g00006 289 SMART sant 13 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181508g00006 Stsc-Chr181508 35920 37179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181508g00006 1 289 MYB Transcription Factor Family AT3G28470 38.439 1.24e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181508g00006 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181508g00006 K09422 - gmx:100815077 306.99