Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181508g00001 ATGAAGCTCTCCGGCCAAATCCCTAGCTCTCTCAAATTCTGCGGTAAGAACATTCAGAAGCTAGATCTCGCTTCGAATTCTCTTTCCTCCGATATACCGCCCGAGATCTGCACCTGGATGCAGTTTCTCGTGTCGTTAGATCTCTCCGATAACCGCCTCACCGGTTCGATTCCGTTTACTCTCGCTAACTGTACTTACTTGAATGAGTTGGTTCTTAACGATAACGAACTTTCTGGAACGATTCCTTACCAGCTTGGGAGTTTGACTAGGTTGAAGAAGTTTTCTGTTGCGAATAACCGTCTTACCGGAACGGTTCCGGCGTTCTTTGACGGTTTTGATAAGGATGGTTTTGACGGTAACGATGGCCTCTGTGGTGGTCCGATTGGGAAGTGTGGTGGCATGAGTAAGAAGAATCTTGCTATAATTGTTGCTGCTGGTGTTTTTGGTGCAGCTGCTTCTTTGCTTTTGGCGTTTGGTTTGTGGTGGTACTATCATTTGAGGGTTGGTGGAGGGAGGAAGAAGGGGTTTAGTGGCGGTGGCGGTGATGGTGGTGATTGGGTTGTGAGCTTGAGAGGGCATAAGCTTGTTCAGGTTACACTTTTTCAGAAGCCGATTGTGAAGGTTAAATTGGGGGATTTGATGGCGGCGACGAATAATTTTAGTGCGGAGAATGTGTTGATTACGACGAGGACTGGGACTACTTATAAGGCGGATTTGCCGGACGGTTCGGCTCTGGCGGTGAAGAGGTTGAGTGCTTGTAAGATTGGGGAGAAGCAGTTTAGGATGGAGATGAATAGGTTGGGGCAGGTGAGGCACCCCAATTTGGCACCCTTGTTGGGGTTCTGTGTGGTGGAGGATGAGAGGTTGTTGGTTTATAAGCACATGTCTAATGGGACTCTCTATTCCTTGCTGCACAAGAATGGAGGCTTGTTGGATTGGATCATGAGGTTTAGGATTGGGGTTGGCGCTGCGAGGGGGCTAGCGTGGCTTCACCACGGCTGCCACCCTCCCATTATTCAGCAGAACATTTGTTCCAATGTGATCCTTGTGGACGAGGATTTTGATGCTAGGTTGATGGATTTCGGGCTTGCTAGGCTCATGGCTTCGGATTCTAACGGGAGTTTCGTGAATGGGGATTTGGGTGAGTTAGGTTATATCGCGCCGGAGTATTCGAGCACCTTGGTTGCTTCGTTGAAAGGGGATGTGTATGGATTTGGGGTCTTGCTTTTGGAATTGGCAACAGGGCGAAAACCACTTGAAGTAAGCAATGGGGAGGATGAGTTTAAGGGGAACTTGGTGGATTGGGTGAACATGCATTCGAGTATGGGCCAACTCAAGGACTGCATTGATAAGGCTATAGCCGGGAGGGGGCACGACGAGGAGATCCTGCAGTTTCTGAAAATTGCGTCTAATTGTGTGGTTAATCGCCCCAAGGATAGATGGTCCATGTACAAGGTTTATAATTCATTGAAGAGTTTATCCAAGGACTCAAGTTTGTTTGATCATGATGATGAATTCCCCTTGATCTTTGGTAAGCCGGAAAACGAGTAG 1551 0.4803 MKLSGQIPSSLKFCGKNIQKLDLASNSLSSDIPPEICTWMQFLVSLDLSDNRLTGSIPFTLANCTYLNELVLNDNELSGTIPYQLGSLTRLKKFSVANNRLTGTVPAFFDGFDKDGFDGNDGLCGGPIGKCGGMSKKNLAIIVAAGVFGAAASLLLAFGLWWYYHLRVGGGRKKGFSGGGGDGGDWVVSLRGHKLVQVTLFQKPIVKVKLGDLMAATNNFSAENVLITTRTGTTYKADLPDGSALAVKRLSACKIGEKQFRMEMNRLGQVRHPNLAPLLGFCVVEDERLLVYKHMSNGTLYSLLHKNGGLLDWIMRFRIGVGAARGLAWLHHGCHPPIIQQNICSNVILVDEDFDARLMDFGLARLMASDSNGSFVNGDLGELGYIAPEYSSTLVASLKGDVYGFGVLLLELATGRKPLEVSNGEDEFKGNLVDWVNMHSSMGQLKDCIDKAIAGRGHDEEILQFLKIASNCVVNRPKDRWSMYKVYNSLKSLSKDSSLFDHDDEFPLIFGKPENE 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181508g00001 516 Gene3D Phosphorylase Kinase; domain 1 182 294 - -
Stsc181508g00001 516 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 109 - -
Stsc181508g00001 516 SUPERFAMILY Protein kinase-like (PK-like) 197 490 IPR011009 -
Stsc181508g00001 516 SUPERFAMILY L domain-like 2 112 - -
Stsc181508g00001 516 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 38 114 - -
Stsc181508g00001 516 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 181 294 - -
Stsc181508g00001 516 Pfam Protein kinase domain 232 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181508g00001 516 Gene3D Transferase(Phosphotransferase) domain 1 295 507 - -
Stsc181508g00001 516 ProSiteProfiles Protein kinase domain profile. 220 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181508g00001 516 Gene3D Ribonuclease Inhibitor 1 139 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181508g00001 Stsc-Chr181508 6639 8950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181508g00001 1 516 Receptor kinase-like Gene Family AT3G28450 63.098 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc181508g00001 Pkinase 6.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181508g00001 - - gmx:100810378 814.298