Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181507g00003 ATGGCGGTTTTACCTGGAAGCTCCTCCAGCTTAGAATTGACCATATCTGTCCCAGGCTTTGCTTCTTCACCACCTCTACTTCCATCATCATCTGTGAAAGAATTGGACATAAACCAATTACCCTCAGAGGAAGAATGGATTGCATCAAACATGGAAGATGAAGAAGAAAGCAGCATCAATGGAGAAGCTCCACGCAAGAAACTCCGCCTCACAAAAGAACAATCTCGTCTCCTTGAAGAAAGCTTCAGACAAAATCACACTTTAAACCCTAAGCAGAAAGAGTCATTGGCAATGCAACTGAAGCTAAGAGCAAGGCAAGTGGAGGTTTGGTTTCAAAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTTAAGAGGTGGTTTGGATCGCTGACAGAGCAAAACAGAAGGCTTCAGAGGGAAGTTGAAGAGCTCAGGGCCATGAAGGTGGGCCCACCAACCATCCTCTCCCCTCACACAAGCCAGCCACTCCCAGCTTCAACCCTAACCATGTGTCCCCGCTGCGAGCGTGTCACCACCACGGCTGCCACCGCCGTCGTCCCCACGTCCACTACTGCTACATTATCTTCCCCTAAATCGCATCAACCTCCAGAAGCTTCTTCATGA 645 0.4977 MAVLPGSSSSLELTISVPGFASSPPLLPSSSVKELDINQLPSEEEWIASNMEDEEESSINGEAPRKKLRLTKEQSRLLEESFRQNHTLNPKQKESLAMQLKLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRAMKVGPPTILSPHTSQPLPASTLTMCPRCERVTTTAATAVVPTSTTATLSSPKSHQPPEASS 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181507g00003 214 SUPERFAMILY Homeodomain-like 52 122 IPR009057 -
Stsc181507g00003 214 CDD homeodomain 64 122 IPR001356 GO:0003677
Stsc181507g00003 214 MobiDBLite consensus disorder prediction 46 68 - -
Stsc181507g00003 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 34 206 - -
Stsc181507g00003 214 FunFam Homeobox-leucine zipper protein 18 49 126 - -
Stsc181507g00003 214 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Stsc181507g00003 214 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Stsc181507g00003 214 Gene3D - 57 128 - -
Stsc181507g00003 214 SMART HOX_1 63 125 IPR001356 GO:0003677
Stsc181507g00003 214 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Stsc181507g00003 214 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Stsc181507g00003 214 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Stsc181507g00003 214 MobiDBLite consensus disorder prediction 192 214 - -
Stsc181507g00003 214 Coils Coil 134 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181507g00003 Stsc-Chr181507 9351 16293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181507g00003 32 185 Homeobox Transcription Factor Family AT1G70920 65.190 5.52e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc181507g00003 Homeodomain 7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181507g00003 K09338 - gmx:100775341 336.265