Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181506g00005 ATGGCTCCCTTCTTATTCGAACCCCAAAGCGACGAAGAGTTCGAACACTCCGAAGAAGAAGAAGAATCATCCGAACCAGAATCCGAACCAGGATCCGAACCAGAAGACTCAGAAGGAGAAGAACAAGAAGACGAACCAGACGAAGCTTCTAGAATATCAAAGGAGAAGAAGAAAACGAAGAAGAAAACACAGTCTCCTTGGGACTTCGCCAAGTACACGGAGTCAGTTGCGGAGGAGCACGCTCGCCGGAGTACAACCTCCGTCGACGAAAAAATCTCCAAAGCACTGAAACAGCGCTCAACACCTCTCGCGCTTCCTTCACAAAACGACGACGTTGACAACTCATCAGACTCCGAACCTGATAAACAGGAAGATTATAGACCAGATGAAGAAGATGAAGAGGAGGGCAATGTTGGTGATAGCAAGTCCTTTTTCGCTCCTTCTGATGGAGCATCTTTCCATGCCGATTCGTTCATGCAGCTTCATTTGTCACGGCCTTTGCTCAGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCAGCTTGTATACCATTGGCGTTGAATGGTCGTGATATATGTGGAAGTGCTATTACTGGGTCAGGAAAGACAGCTGCATTTGCACTTCCCACATTAGAGAGGTTATTGTTTCGTCCTAAACGCATGCATGCAATAAGGGTCCTTATTCTTACACCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAATTCACTGATATTAGATGTTGCCTGGTTGTTGGGGGTTTGTCGACAAAGGTGCAAGAAGCTGCTTTGAGATCAATGCCAGACATTGTTGTTGCTACCCCAGGACGTATGATAGATCATTTACGAAATTCTATGTCGGTGGATTTGGATGATCTTGCTGTGTTAATCCTTGATGAGGCGGATCGTCTTTTAGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAGAAAAGGCAGACAATGCTGTTTTCAGCAACAATGACTGAGGAGGTTAATGAGCTTATTATGTTGTCGCTAACAAAACCCGTGCGTCTTTCTGCTGATCCATCTGCTAAACGGCCTGCAGCCTTGACTGAGGAGGTAGTTAGAATACGAAGATTGCGTGAAGCAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTGATTGTCTTCAGTGGAACAAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGTCTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAAGCTTTGGAACAATTCAGGAAGCAAGAAGTTGACTTCTTGATTGCAACTGATGTGGCTGCTCGTGGGCTTGACATCATAGGTGTTCAAACAGTTATCAACTATGCATGTCCCCGCGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACAGCCAGAGCTGGCAGGGAAGGATGCGCCGTCACATTTGTGACTGATAATGACCGGTCACTTCTAAAAGCAATTGCAAAGAGGGCTGGTTCAAAGCTGAAGAGCCGAATTGTAGCCGAGCAATCCATACTTAAATGGTCTCATATAATTGATCAATTGGAGGATCAAGTTGCAGAAGTACTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGAAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCTTTTAAGGAAGAGATCTTTTCCCGCCCAAAACGAACCTGGTTTGTAACAGAGACGGAAAAGAAGGTTGCTGCAAAAGCAGCGAAGGCATCCATTAATAACGAGAAGAGCTCTAGAAAGGTAATAAGTGCTCAGGAAGCCGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGGGAACGAGAGAAAAATTTGCCAAGGAAGAAGCGTAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAAGATGAAGGAGATGATGAAGAACCAGAAGCTAAGGGGGCAAATAAGAAAGAAAAGGGTGGACTTTCACTTGTTGATGTTGCTTATCGACGAGCAAAAGCAGTTAAGGCTGTGAAGAAGGCAATGGATTCAGGAAAGATCGTGAAGAAGAACAAAAAGAATACCGATCGTCCTTCACATAAGTCGTCATCTTCAAGGACAGAGGAGATGCGGGAGCTATTCCAGGCTGACATGAAGGACAAAAAGCCGAAAAGAAGAGGTGCCAGAGCAGGAAAGAAATCCAAGAGTTCGTTCAAAAGCAAGTCAAGGTACAAGCGCAGGTAG 2286 0.4501 MAPFLFEPQSDEEFEHSEEEEESSEPESEPGSEPEDSEGEEQEDEPDEASRISKEKKKTKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLALPSQNDDVDNSSDSEPDKQEDYRPDEEDEEEGNVGDSKSFFAPSDGASFHADSFMQLHLSRPLLRACEALGYAKPTPIQAACIPLALNGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVNELIMLSLTKPVRLSADPSAKRPAALTEEVVRIRRLREANQEAVLLAMCSKTFTSKVIVFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVDFLIATDVAARGLDIIGVQTVINYACPRDLTSYVHRVGRTARAGREGCAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSHIIDQLEDQVAEVLEEEREERALRKAEMEATKAENMIAFKEEIFSRPKRTWFVTETEKKVAAKAAKASINNEKSSRKVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDEGDDEEPEAKGANKKEKGGLSLVDVAYRRAKAVKAVKKAMDSGKIVKKNKKNTDRPSHKSSSSRTEEMRELFQADMKDKKPKRRGARAGKKSKSSFKSKSRYKRR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181506g00005 761 Pfam Helicase conserved C-terminal domain 393 496 IPR001650 -
Stsc181506g00005 761 MobiDBLite consensus disorder prediction 1 145 - -
Stsc181506g00005 761 Gene3D - 120 363 IPR027417 -
Stsc181506g00005 761 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 39 711 - -
Stsc181506g00005 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 516 IPR027417 -
Stsc181506g00005 761 SMART ultradead3 175 376 IPR014001 -
Stsc181506g00005 761 MobiDBLite consensus disorder prediction 739 761 - -
Stsc181506g00005 761 CDD SF2_C_DEAD 373 505 - -
Stsc181506g00005 761 Gene3D - 373 571 IPR027417 -
Stsc181506g00005 761 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 156 184 IPR014014 GO:0003724
Stsc181506g00005 761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 535 IPR001650 -
Stsc181506g00005 761 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 307 315 IPR000629 -
Stsc181506g00005 761 Coils Coil 534 581 - -
Stsc181506g00005 761 MobiDBLite consensus disorder prediction 61 96 - -
Stsc181506g00005 761 MobiDBLite consensus disorder prediction 12 46 - -
Stsc181506g00005 761 Coils Coil 619 639 - -
Stsc181506g00005 761 MobiDBLite consensus disorder prediction 616 634 - -
Stsc181506g00005 761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 187 361 IPR014001 -
Stsc181506g00005 761 Pfam DEAD/DEAH box helicase 180 350 IPR011545 GO:0003676|GO:0005524
Stsc181506g00005 761 MobiDBLite consensus disorder prediction 686 738 - -
Stsc181506g00005 761 CDD DEADc_DDX27 167 362 - -
Stsc181506g00005 761 MobiDBLite consensus disorder prediction 606 761 - -
Stsc181506g00005 761 SMART helicmild6 411 496 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181506g00005 Stsc-Chr181506 33189 39805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181506g00005 144 513 Eukaryotic Initiation Factors Gene Family AT3G13920 32.976 3.99e-51 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181506g00005 K13181 - gmx:100776684 1016.14