Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181503g00006 ATGGCTGAAGGCGTTGGTGAAGCAAACAAACCGTCACCATCGCCGCCATTGCCGCCACCAGTAACAGAATCAGAGAAGAAGAAAGAACAGAGCCTTCCGTTCTACAAGCTCTTCTCATTCGCAGACAAGTATGACATCATGCTCATGATCTGTGGAACCTTAGGCGCCATTGTTCATGGCTCCTCCATGCCCGTCTTCTTCCTCCTCTTCGGTAAAATGGTCAACGGCTTCGGTAAAAACCAAATGGACCTTAACTCCATGACTCATGAAGTCTCAAAGTATGCTCTTGACTTCGTGTACCTTGGCCTTGTGGTTTGCGTATCATCTTATGCAGAAATATCATGCTGGATGTACAGTGGGGAGAGGCAAGTGAGCACGCTGAGGAAGAAGTATCTGGAAGCGGTGCTGAAGCAAGACGTTGGTTTCTTTGATACAGATGCAAGAACGGGAGATATTGTTTTCAGTGTCTCAACGGATACTCTTCTTGTTCAAGATGCCATTAGTGAGAAGGTTGGGAACTTCATACATTATCTTTCAACGTTTCTGGCTGGACTTGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCACTTCTAAGTGTTGCTGTGATTCCGGGCATCGCTTTCGCTGGCGGCTTGTATGCTTACACTCTCACCGGCCTAACCTCCAAGAGTCGCGAATCCTATTCCAATGCCGGCATCATTGCAGAACAGGCCATTGCGCAAGTTAGAACCGTTTACTCTTATGTCGGCGAGAGCAAGGCACTGAACTCTTATTCAGATGCAATACAAAACACTCTGAAGCTTGGATACAAAGCAGGAATGGCAAAAGGATTAGGCCTTGGATGCACATATGGGATAGCTTGTATGTCATGGGCACTAGTCTTTTGGTATGCTGGCGTTTTCATCCGAAATGGACAAACCGACGGAGGCAAGGCCTTCACGGCTATTTTCTCGGCCATTGTTGGTGGAATGAGTTTGGGACAATCTTTTTCGAATTTAGGTGCTTTTAGTAAAGGCAAAGCGGCCGGATACAAATTAATGGAGATCATCAAGCAGAAACCAACTATAGTGGAAGATCCTTTGGAAGGGAAGTGCTTGGGCGAGGTTAATGGCAACATTGAATTCAAGGATGTTAGTTTTAGCTATCCTTCGCGGCCGGATGTGATGATCTTTCGCAATTTCTCAATCTTCTTTCCGGCCGGGAAAACTGTGGCTGTTGTAGGTGGCAGTGGATCAGGAAAGAGTACTGTTGTTTCCTTGATTGAAAGGTTCTATGATCCAAATGGAGGTCAAGTTCTGCTAGATAATGTGGACATTAAGACACTGCAACTAAAATGGTTGCGCGATCAAATCGGATTGGTGAATCAAGAACCTGCCCTCTTTGCAACCACCATTCTTGAGAACATACTCTATGGGAAACCTGATGCAACAATTGCTGAAGTGGAAGCAGCAACTACTGCTGCAAATGCTCATAGCTTTATTACCTTGCTTCCCAATGGCTATAACACTCAGGTGGGAGAGCGAGGAGTGCAATTATCCGGAGGCCAAAAGCAGAGAATTGCAATTGCAAGAGCAATGTTCCAAGAAATGGTTGGAAATAGGGACTTCTCCAACCCGTCAACTCGCCGGACGCGGTCATCCCGGCTCAGCCATTCCCTCTCTACAAAGTCCTTAAGCCTCCGATCCGGAAGCTTAAGGAACTTGAGCTACCAGTACAGCACCGGAGCCGACGGCCGCATAGAAATGATATCTAACGCGGAGACGGAGAAGAAGAATCCGGCCCCGGACGGATACTTCCTCCGTTTGCTCAAGATGAATGCACCTGAATGGCCTTACTCAATCATGGGAGCAGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCAACTTTCGCTATTGTGATGAGTAACATGATTGAGGTTTTTTACTATACAAACTATGCAACTATGGAGAAGAAGACAAAGGAATATGTATTCATATACATCGGAGCTGGGCTTTATGCGGTCGTCGCATACTTGATTCAGCATTACTTTTTCAGTATCATGGGTGAGAACCTCACCACAAGGGTTAGAAGAATGATGCTTGCAGCTATATTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAACACAACTCAAGCTTGGTGGCAGCAAGGCTTGCAACAGATGCAGCTGACGTGAAGTCTGCCATTGCTGAAAGGATTTCAGTCATTCTACAGAACATGACTTCCCTGCTCACTTCTTTCATTGTTGCTTTCATTGTTGAATGGAGGGTTTCACTGCTCATTCTTGCTACCTTCCCTCTCCTTGTCCTAGCCAATTTCGCACAGCAACTTTCTCTGAAAGGTTTTGCCGGAGACACAGCGAAAGCTCATGCAAAGACAAGTATGATTGCTGGAGAAGGAGTGAGCAACATCAGAACCGTTGCAGCATTCAATGCACAGAACAAGATGTTATCAGTCTTCACCCACGAGCTTCGAGTGCCGCAGATGATAAGCCTCCGCCGGAGCCAGACCGCCGGCATCTTGTTCGGCATCTCGCAGCTTGCCCTCTATGCCTCTGAGGCTCTCATTCTGTGGTACGGTGCACATTTGGTCAGCAAAGGTGTTTCAAGCTTCTCAAAGGTCATCAAGGTCTTTGTAGTCCTTGTCATCACGGCGAATTCGGTTGCTGAGACAGTTAGCCTCGCCCCGGAGATAGTCCGTGGCGGGGAGGCAGTCGGTTCTGTTTTCTCCATCCTCGATAAGCACACCAGGATCGACCCAGATGATCCTGATGCTGAGCCAGTCGAGTCAGTTCGCGGAGAAATCGAGCTTAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATCTAAGCCTCAGAATTAGGGCAGGCCAAAGCCAAGCCCTCGTCGGAGCGAGTGGATCGGGGAAGAGTTCGGTCATCGCGCTTATCGAGAGATTCTATGATCCCTTAGCCGGGAAAGTAATGGTGGATGGAAAAGACATAAGGAAACTTAACTTGAAGTCCTTGAGACTCAAGATTGGTTTGGTCCAACAAGAGCCAGCATTGTTTGCAGCTTCCATATTTGATAATATTGCTTATGGAAAGGAAGGGGCCACCGAATCCGAGGTGATCGAGGCGGCTAGGGCCGCCAACGTGCACGCCTTTGTTAGCGGCCTGCCCGAGGGATACAAAACACCCGTCGGCGAACGGGGCGTGCAGCTCTCGGGGGGCCAGAAGCAAAGGATTGCAATTGCTAGGGCTGTCCTTAAGGACCCTGCAATATTGCTTCTTGATGAAGCAACAAGTGCACTTGATGCTGAGTCAGAGTGTGTCCTACAAGAGGCATTGGAGAGGCTCATGAGGGGGAGGACGACGGTGCTCGTCGCGCACCGGTTGTCCACCATAAGAGGGGTTGATTGCATTGGTGTGGTCCAAGATGGGCGCATTGTGGAACAAGGTAGCCATTCTGAGCTTATAAGCAGGCCTGAGGGTGCATATTCTAGACTCTTGCAACTACAACACCATCACATTTGA 3537 0.4818 MAEGVGEANKPSPSPPLPPPVTESEKKKEQSLPFYKLFSFADKYDIMLMICGTLGAIVHGSSMPVFFLLFGKMVNGFGKNQMDLNSMTHEVSKYALDFVYLGLVVCVSSYAEISCWMYSGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYSNAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPLEGKCLGEVNGNIEFKDVSFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNGGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATIAEVEAATTAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETEKKNPAPDGYFLRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYTNYATMEKKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFTHELRVPQMISLRRSQTAGILFGISQLALYASEALILWYGAHLVSKGVSSFSKVIKVFVVLVITANSVAETVSLAPEIVRGGEAVGSVFSILDKHTRIDPDDPDAEPVESVRGEIELRHVDFAYPSRPDVMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPLAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATESEVIEAARAANVHAFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI 1178
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181503g00006 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1174 IPR027417 -
Stsc181503g00006 1178 SUPERFAMILY ABC transporter transmembrane region 36 358 IPR036640 GO:0005524|GO:0016020
Stsc181503g00006 1178 SUPERFAMILY ABC transporter transmembrane region 595 915 IPR036640 GO:0005524|GO:0016020
Stsc181503g00006 1178 CDD ABC_MTABC3_MDL1_MDL2 936 1174 - -
Stsc181503g00006 1178 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 614 901 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181503g00006 1178 PANTHER ABC TRANSPORTER B FAMILY 23 528 IPR039421 -
Stsc181503g00006 1178 Pfam ABC transporter transmembrane region 614 885 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181503g00006 1178 Pfam ABC transporter transmembrane region 49 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181503g00006 1178 CDD ABC_6TM_Pgp_ABCB1_D2_like 603 919 - -
Stsc181503g00006 1178 Pfam ABC transporter 955 1103 IPR003439 GO:0005524
Stsc181503g00006 1178 CDD ABC_6TM_Pgp_ABCB1_D1_like 49 346 - -
Stsc181503g00006 1178 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 938 1172 IPR003439 GO:0005524
Stsc181503g00006 1178 FunFam ABC transporter B family member 1 593 902 - -
Stsc181503g00006 1178 FunFam ABC transporter B family member 1 36 369 - -
Stsc181503g00006 1178 Gene3D - 926 1177 IPR027417 -
Stsc181503g00006 1178 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 338 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181503g00006 1178 MobiDBLite consensus disorder prediction 1 27 - -
Stsc181503g00006 1178 ProSitePatterns ABC transporters family signature. 1075 1089 IPR017871 GO:0005524|GO:0016887
Stsc181503g00006 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 528 IPR027417 -
Stsc181503g00006 1178 Gene3D - 396 535 IPR027417 -
Stsc181503g00006 1178 MobiDBLite consensus disorder prediction 534 555 - -
Stsc181503g00006 1178 FunFam ABC transporter B family member 19 926 1175 - -
Stsc181503g00006 1178 Gene3D ABC transporter type 1, transmembrane domain 27 395 IPR036640 GO:0005524|GO:0016020
Stsc181503g00006 1178 Gene3D ABC transporter type 1, transmembrane domain 560 924 IPR036640 GO:0005524|GO:0016020
Stsc181503g00006 1178 SMART AAA_5 400 609 IPR003593 GO:0016887
Stsc181503g00006 1178 SMART AAA_5 963 1149 IPR003593 GO:0016887
Stsc181503g00006 1178 Pfam ABC transporter 392 529 IPR003439 GO:0005524
Stsc181503g00006 1178 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 602 IPR003439 GO:0005524
Stsc181503g00006 1178 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524|GO:0016887
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181503g00006 Stsc-Chr181503 52671 60719 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181503g00006 28 606 Calmodulin-binding Proteins AT2G36910 33.727 1.89e-84 299
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181503g00006 K05658 - csv:101212585 1345.87