Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181503g00006 | ATGGCTGAAGGCGTTGGTGAAGCAAACAAACCGTCACCATCGCCGCCATTGCCGCCACCAGTAACAGAATCAGAGAAGAAGAAAGAACAGAGCCTTCCGTTCTACAAGCTCTTCTCATTCGCAGACAAGTATGACATCATGCTCATGATCTGTGGAACCTTAGGCGCCATTGTTCATGGCTCCTCCATGCCCGTCTTCTTCCTCCTCTTCGGTAAAATGGTCAACGGCTTCGGTAAAAACCAAATGGACCTTAACTCCATGACTCATGAAGTCTCAAAGTATGCTCTTGACTTCGTGTACCTTGGCCTTGTGGTTTGCGTATCATCTTATGCAGAAATATCATGCTGGATGTACAGTGGGGAGAGGCAAGTGAGCACGCTGAGGAAGAAGTATCTGGAAGCGGTGCTGAAGCAAGACGTTGGTTTCTTTGATACAGATGCAAGAACGGGAGATATTGTTTTCAGTGTCTCAACGGATACTCTTCTTGTTCAAGATGCCATTAGTGAGAAGGTTGGGAACTTCATACATTATCTTTCAACGTTTCTGGCTGGACTTGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCACTTCTAAGTGTTGCTGTGATTCCGGGCATCGCTTTCGCTGGCGGCTTGTATGCTTACACTCTCACCGGCCTAACCTCCAAGAGTCGCGAATCCTATTCCAATGCCGGCATCATTGCAGAACAGGCCATTGCGCAAGTTAGAACCGTTTACTCTTATGTCGGCGAGAGCAAGGCACTGAACTCTTATTCAGATGCAATACAAAACACTCTGAAGCTTGGATACAAAGCAGGAATGGCAAAAGGATTAGGCCTTGGATGCACATATGGGATAGCTTGTATGTCATGGGCACTAGTCTTTTGGTATGCTGGCGTTTTCATCCGAAATGGACAAACCGACGGAGGCAAGGCCTTCACGGCTATTTTCTCGGCCATTGTTGGTGGAATGAGTTTGGGACAATCTTTTTCGAATTTAGGTGCTTTTAGTAAAGGCAAAGCGGCCGGATACAAATTAATGGAGATCATCAAGCAGAAACCAACTATAGTGGAAGATCCTTTGGAAGGGAAGTGCTTGGGCGAGGTTAATGGCAACATTGAATTCAAGGATGTTAGTTTTAGCTATCCTTCGCGGCCGGATGTGATGATCTTTCGCAATTTCTCAATCTTCTTTCCGGCCGGGAAAACTGTGGCTGTTGTAGGTGGCAGTGGATCAGGAAAGAGTACTGTTGTTTCCTTGATTGAAAGGTTCTATGATCCAAATGGAGGTCAAGTTCTGCTAGATAATGTGGACATTAAGACACTGCAACTAAAATGGTTGCGCGATCAAATCGGATTGGTGAATCAAGAACCTGCCCTCTTTGCAACCACCATTCTTGAGAACATACTCTATGGGAAACCTGATGCAACAATTGCTGAAGTGGAAGCAGCAACTACTGCTGCAAATGCTCATAGCTTTATTACCTTGCTTCCCAATGGCTATAACACTCAGGTGGGAGAGCGAGGAGTGCAATTATCCGGAGGCCAAAAGCAGAGAATTGCAATTGCAAGAGCAATGTTCCAAGAAATGGTTGGAAATAGGGACTTCTCCAACCCGTCAACTCGCCGGACGCGGTCATCCCGGCTCAGCCATTCCCTCTCTACAAAGTCCTTAAGCCTCCGATCCGGAAGCTTAAGGAACTTGAGCTACCAGTACAGCACCGGAGCCGACGGCCGCATAGAAATGATATCTAACGCGGAGACGGAGAAGAAGAATCCGGCCCCGGACGGATACTTCCTCCGTTTGCTCAAGATGAATGCACCTGAATGGCCTTACTCAATCATGGGAGCAGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCAACTTTCGCTATTGTGATGAGTAACATGATTGAGGTTTTTTACTATACAAACTATGCAACTATGGAGAAGAAGACAAAGGAATATGTATTCATATACATCGGAGCTGGGCTTTATGCGGTCGTCGCATACTTGATTCAGCATTACTTTTTCAGTATCATGGGTGAGAACCTCACCACAAGGGTTAGAAGAATGATGCTTGCAGCTATATTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAACACAACTCAAGCTTGGTGGCAGCAAGGCTTGCAACAGATGCAGCTGACGTGAAGTCTGCCATTGCTGAAAGGATTTCAGTCATTCTACAGAACATGACTTCCCTGCTCACTTCTTTCATTGTTGCTTTCATTGTTGAATGGAGGGTTTCACTGCTCATTCTTGCTACCTTCCCTCTCCTTGTCCTAGCCAATTTCGCACAGCAACTTTCTCTGAAAGGTTTTGCCGGAGACACAGCGAAAGCTCATGCAAAGACAAGTATGATTGCTGGAGAAGGAGTGAGCAACATCAGAACCGTTGCAGCATTCAATGCACAGAACAAGATGTTATCAGTCTTCACCCACGAGCTTCGAGTGCCGCAGATGATAAGCCTCCGCCGGAGCCAGACCGCCGGCATCTTGTTCGGCATCTCGCAGCTTGCCCTCTATGCCTCTGAGGCTCTCATTCTGTGGTACGGTGCACATTTGGTCAGCAAAGGTGTTTCAAGCTTCTCAAAGGTCATCAAGGTCTTTGTAGTCCTTGTCATCACGGCGAATTCGGTTGCTGAGACAGTTAGCCTCGCCCCGGAGATAGTCCGTGGCGGGGAGGCAGTCGGTTCTGTTTTCTCCATCCTCGATAAGCACACCAGGATCGACCCAGATGATCCTGATGCTGAGCCAGTCGAGTCAGTTCGCGGAGAAATCGAGCTTAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAGGATCTAAGCCTCAGAATTAGGGCAGGCCAAAGCCAAGCCCTCGTCGGAGCGAGTGGATCGGGGAAGAGTTCGGTCATCGCGCTTATCGAGAGATTCTATGATCCCTTAGCCGGGAAAGTAATGGTGGATGGAAAAGACATAAGGAAACTTAACTTGAAGTCCTTGAGACTCAAGATTGGTTTGGTCCAACAAGAGCCAGCATTGTTTGCAGCTTCCATATTTGATAATATTGCTTATGGAAAGGAAGGGGCCACCGAATCCGAGGTGATCGAGGCGGCTAGGGCCGCCAACGTGCACGCCTTTGTTAGCGGCCTGCCCGAGGGATACAAAACACCCGTCGGCGAACGGGGCGTGCAGCTCTCGGGGGGCCAGAAGCAAAGGATTGCAATTGCTAGGGCTGTCCTTAAGGACCCTGCAATATTGCTTCTTGATGAAGCAACAAGTGCACTTGATGCTGAGTCAGAGTGTGTCCTACAAGAGGCATTGGAGAGGCTCATGAGGGGGAGGACGACGGTGCTCGTCGCGCACCGGTTGTCCACCATAAGAGGGGTTGATTGCATTGGTGTGGTCCAAGATGGGCGCATTGTGGAACAAGGTAGCCATTCTGAGCTTATAAGCAGGCCTGAGGGTGCATATTCTAGACTCTTGCAACTACAACACCATCACATTTGA | 3537 | 0.4818 | MAEGVGEANKPSPSPPLPPPVTESEKKKEQSLPFYKLFSFADKYDIMLMICGTLGAIVHGSSMPVFFLLFGKMVNGFGKNQMDLNSMTHEVSKYALDFVYLGLVVCVSSYAEISCWMYSGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYSNAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPLEGKCLGEVNGNIEFKDVSFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNGGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATIAEVEAATTAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETEKKNPAPDGYFLRLLKMNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYTNYATMEKKTKEYVFIYIGAGLYAVVAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFTHELRVPQMISLRRSQTAGILFGISQLALYASEALILWYGAHLVSKGVSSFSKVIKVFVVLVITANSVAETVSLAPEIVRGGEAVGSVFSILDKHTRIDPDDPDAEPVESVRGEIELRHVDFAYPSRPDVMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPLAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGATESEVIEAARAANVHAFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHSELISRPEGAYSRLLQLQHHHI | 1178 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181503g00006 | 1178 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 925 | 1174 | IPR027417 | - | |
Stsc181503g00006 | 1178 | SUPERFAMILY | ABC transporter transmembrane region | 36 | 358 | IPR036640 | GO:0005524|GO:0016020 | |
Stsc181503g00006 | 1178 | SUPERFAMILY | ABC transporter transmembrane region | 595 | 915 | IPR036640 | GO:0005524|GO:0016020 | |
Stsc181503g00006 | 1178 | CDD | ABC_MTABC3_MDL1_MDL2 | 936 | 1174 | - | - | |
Stsc181503g00006 | 1178 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 614 | 901 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Stsc181503g00006 | 1178 | PANTHER | ABC TRANSPORTER B FAMILY | 23 | 528 | IPR039421 | - | |
Stsc181503g00006 | 1178 | Pfam | ABC transporter transmembrane region | 614 | 885 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Stsc181503g00006 | 1178 | Pfam | ABC transporter transmembrane region | 49 | 323 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Stsc181503g00006 | 1178 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 603 | 919 | - | - | |
Stsc181503g00006 | 1178 | Pfam | ABC transporter | 955 | 1103 | IPR003439 | GO:0005524 | |
Stsc181503g00006 | 1178 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 49 | 346 | - | - | |
Stsc181503g00006 | 1178 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 938 | 1172 | IPR003439 | GO:0005524 | |
Stsc181503g00006 | 1178 | FunFam | ABC transporter B family member 1 | 593 | 902 | - | - | |
Stsc181503g00006 | 1178 | FunFam | ABC transporter B family member 1 | 36 | 369 | - | - | |
Stsc181503g00006 | 1178 | Gene3D | - | 926 | 1177 | IPR027417 | - | |
Stsc181503g00006 | 1178 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 52 | 338 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
Stsc181503g00006 | 1178 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Stsc181503g00006 | 1178 | ProSitePatterns | ABC transporters family signature. | 1075 | 1089 | IPR017871 | GO:0005524|GO:0016887 | |
Stsc181503g00006 | 1178 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 367 | 528 | IPR027417 | - | |
Stsc181503g00006 | 1178 | Gene3D | - | 396 | 535 | IPR027417 | - | |
Stsc181503g00006 | 1178 | MobiDBLite | consensus disorder prediction | 534 | 555 | - | - | |
Stsc181503g00006 | 1178 | FunFam | ABC transporter B family member 19 | 926 | 1175 | - | - | |
Stsc181503g00006 | 1178 | Gene3D | ABC transporter type 1, transmembrane domain | 27 | 395 | IPR036640 | GO:0005524|GO:0016020 | |
Stsc181503g00006 | 1178 | Gene3D | ABC transporter type 1, transmembrane domain | 560 | 924 | IPR036640 | GO:0005524|GO:0016020 | |
Stsc181503g00006 | 1178 | SMART | AAA_5 | 400 | 609 | IPR003593 | GO:0016887 | |
Stsc181503g00006 | 1178 | SMART | AAA_5 | 963 | 1149 | IPR003593 | GO:0016887 | |
Stsc181503g00006 | 1178 | Pfam | ABC transporter | 392 | 529 | IPR003439 | GO:0005524 | |
Stsc181503g00006 | 1178 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 373 | 602 | IPR003439 | GO:0005524 | |
Stsc181503g00006 | 1178 | ProSitePatterns | ABC transporters family signature. | 512 | 526 | IPR017871 | GO:0005524|GO:0016887 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181503g00006 | Stsc-Chr181503 | 52671 | 60719 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181503g00006 | 28 | 606 | Calmodulin-binding Proteins | AT2G36910 | 33.727 | 1.89e-84 | 299 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181503g00006 | K05658 | - | csv:101212585 | 1345.87 |