Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181503g00002 ATGATGGAGGAAAGGAATAACAATAATATTGAGATGATGGAAAATAATAAGATTGAAGATGAGATGATGCCAGGTTTCAGATTCCACCCAACAGATGAAGAGATTGTTGATTTTTATCTAAAGAGAAAAATTCAGCAGAAATCTCTTCCCATTGAATTGATCAAGCAAGTTGATATCTACAAGTATGAGCCATGGGACCTTCCAAGGTTGGCAAGTAATGGAGAGAAAGAGTGGTATTTCTACTGCCCAAGAGACAGAAAATACAGGAACAGTGCAAGACCAAACAGAGTTACAAGATGTGGGTTTTGGAAGGCCACTGGAACTGACAGACCCATTTACTCTTCTGAGGGTAAATCCATTATTATTGGTTTGAAGAAATCACTTGTTTTCTACAGAGGAAGAGCTGCTAAGGGTTTCAAAACTGATTGGATGATGCATGAGTTTAGGCTCCCTTCTCTTTCTTCTTCTTCTGATTCATCCAACAAACTCTCTCACAAAACCATCCCTGCTTCTGATTCATGGGCAATATGTAGGATATTCAAGAAAACAAACACAATGTCAATGGCACACAAAGCCTCATTATCTCATCATCAGCATCCTTATTATAATTGGAATCATCATAATCAATTATTTGATGACTTAATCCCACATCAACAACAACAACATTCTATTCCAATCTCCAACACCAACAACTTCAGCTTCTACCATAACACTTCCAATACTACCCTTGATGAAGCCACAAAAGAAATTGATGCTACTACTAATACTAATAGTAGCTCAATTATTTCTTCCAACATTGCCCTTCATGAAGATAATCAAAATCATCATCATCATCATTTCAACAACAACAGTAGTAGTGGCTTCTCATCTTCTTCAATTAGCATACCCCATGATATTATGATGATGCAACCAAACATCATGGTAGCTACTACGTCAGATGATGATGATTCAGCTTTAATTACTACAACAACAACAACAACAATTGGGTTCCCATTCAATTTGCCTCCAAATGATAATACTACTATGCCATGGGATTACTCTTCAGAAATCTCCACTACCTATTCCACCAATTAA 1074 0.3678 MMEERNNNNIEMMENNKIEDEMMPGFRFHPTDEEIVDFYLKRKIQQKSLPIELIKQVDIYKYEPWDLPRLASNGEKEWYFYCPRDRKYRNSARPNRVTRCGFWKATGTDRPIYSSEGKSIIIGLKKSLVFYRGRAAKGFKTDWMMHEFRLPSLSSSSDSSNKLSHKTIPASDSWAICRIFKKTNTMSMAHKASLSHHQHPYYNWNHHNQLFDDLIPHQQQQHSIPISNTNNFSFYHNTSNTTLDEATKEIDATTNTNSSSIISSNIALHEDNQNHHHHHFNNNSSSGFSSSSISIPHDIMMMQPNIMVATTSDDDDSALITTTTTTTIGFPFNLPPNDNTTMPWDYSSEISTTYSTN 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181503g00002 357 FunFam NAC domain-containing protein 35 31 185 - -
Stsc181503g00002 357 Gene3D NAC domain 31 187 IPR036093 GO:0003677|GO:0006355
Stsc181503g00002 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 273 - -
Stsc181503g00002 357 ProSiteProfiles NAC domain profile. 22 182 IPR003441 GO:0003677|GO:0006355
Stsc181503g00002 357 Pfam No apical meristem (NAM) protein 24 150 IPR003441 GO:0003677|GO:0006355
Stsc181503g00002 357 SUPERFAMILY NAC domain 13 182 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181503g00002 Stsc-Chr181503 4348 6602 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181503g00002 1 187 NAC Transcription Factor Family AT5G39820 67.337 1.29e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181503g00002 NAM 9.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181503g00002 - - aip:107621433 391.349