Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181500g00002 ATGCTGTCCAATCATTTTCAAAACGGCATCGAAACGGTGAGGCATGCTTGGTCGCGGATCCCCAACTCCGAAGAATCACAGTTCGTCGACGACGCCGTTGGGCTCGTCAGGAAGAGCGATGGAAGCAGCGTTGATAGCCTTGACTATGAAGTCATAGAAAATTTTGCTTATCGGGAAGAACAGGCGCGCCGAGGGAAGCTGTACGTGAGTTATTTGCTGGTGGTGAAGTGGATTTTCGCCTTGCTCATTGGCATTGGCACTGGTCTTGCTGCTGTTTTCATCAACTTGTCTGTTGAAAATTTTGCTGGCTGGAAATTCTCATTGACGTTTAGTATAATTCAGAAGTCATACATTGCTGGCTTTCTCCTATATGCTCTGATCAACTTGGTTTTGGTGTTTTCCTCTGTATACATTGTCACACAGTTTGCACCAGCTGCTGCTGGCTCTGGTATTCCTGAAATCAAGGGCTACTTAAATGGGGTTGATATTCATGGGATCCTTCTTCTGAGAACTTTGATCGGAAAGATATTTGGCAGCATTGGTTCAGTGGGAGGAGGCCTTGCTTTAGGTAAAGAGGGTCCTCTTGTCCATACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGTTCCACTAAATATCATATAAATTCAAGATGGTTTCAAGTATTCAGAAGTGATCGAGATCGCCGAGATCTGGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCTGCATTTAGAGCTCCTGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTTACATCTTGGTATGGAATTCTTATGCGAACTGCAATGGGATGGTGTAAGAATGGAAATTGCGGACATTTTGGGTCTGGCGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCCTTTGCAGAGCTATTGCCGATGGCTATTATTGGGGTTATCGGAGGCCTACTAGGAGCTTTATTTAACCAGCTTACACTTTATATTTCTAGTTGGCGCCGAAACCATCTTCACAAAAAAGGGATCCGAGTTAAGATTATTGAAGCATGCCTCGTCTCCCTTTTAACGTCAATTATTTCATTTTGCTTGCCGCTTCTAAGAAAATGTAGTCCATGTCCGGCATCTGATCCTACTTCTGGTATTGAATGCCCACGTCCTCCTGGAATGTATGGAAATTATGTAAATTTCTTTTGTAGCAGTGACAAGGAGTATAATGATCTTGCGACTATTTTCTTCAATACACAGGATGATGCCATCAGGAACTTGTTCAGTGCGAAAACAATGCATGAGTACAGTTCCCAAAGTCTGTTAACTTTTTTGGTTATGTTTTATACTTTAGCAGTGTTGACATTTGGTACTGCAGTACCAGCTGGTCAATTTGTCCCTGGTATAATGATAGGATCAACTTATGGACGTCTTGTTGGCATGTTTGTTGTAAAATATTACAAAAAGCCCAACATTGAAGAGGGAACGTATGCTTTGCTGGGAGCTGCATCTTTTCTTGGTGGTTCAATGCGGATGACAGTGTCTCTTTGTGTCATTATGGTTGAAATAACGAATAACCTGAAACTTTTACCCCTTATTATGCTTGTTCTTCTTATGTCAAAGGCTGTTGGTGATGCTTTTAATGAGGGCCTATATGAAGAACAGGCAAGATTAAGGGGCATTCCTTTACTGGAATCAAGGCCTAAATATGAGATGCGGAACATGACAGCAAAGGAGGCCTGTGGAAGTGGAAGGGTTATCTCGTTACCTCGGGTAGTTAAGGTTTCAGATGTAGTTTCCATTCTAAGGAGCAACAAACACAATGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAATCGCTTGTTATTGGATTAGTGCTTCGGAGTCATTTGTTGGTAATCCTTCAGTCAAAGGTTGATTTCCAGCATAGCCCTTTACCCTCTGATCCCAGAGGCGGGGACAGGTCAATCAGGCACGATTCTCATGAATTTGCTAAGCCCGTTTCTAGTAAGGGGAGAAGCATCGATGATATACATCTAAGTTCGGATGACTTGGAAATGTACATAGATCTTGCTCCATTTTTGAATCCCTCACCATACATTGTCCCTGAAGATATGTCTTTGGCAAAGGTGTACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTGTTTGTTGTTCCTCGTCCATCTCGTGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACGGAAAATGTGAATACCTTAGAGCTTCAGTCAACTAGTGTAAGAAATCGGCATCATAATAAAAGACTGATGACAAGGAACTCAGATGTGGAGCGCCCTTTGCTCAGCGGTCTTCTCGTCGATTCAGAATAA 2355 0.4268 MLSNHFQNGIETVRHAWSRIPNSEESQFVDDAVGLVRKSDGSSVDSLDYEVIENFAYREEQARRGKLYVSYLLVVKWIFALLIGIGTGLAAVFINLSVENFAGWKFSLTFSIIQKSYIAGFLLYALINLVLVFSSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLLRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHINSRWFQVFRSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWYGILMRTAMGWCKNGNCGHFGSGGFIIWDISDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYISSWRRNHLHKKGIRVKIIEACLVSLLTSIISFCLPLLRKCSPCPASDPTSGIECPRPPGMYGNYVNFFCSSDKEYNDLATIFFNTQDDAIRNLFSAKTMHEYSSQSLLTFLVMFYTLAVLTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLMSKAVGDAFNEGLYEEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVISLPRVVKVSDVVSILRSNKHNGFPVIDHTRSGESLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRGGDRSIRHDSHEFAKPVSSKGRSIDDIHLSSDDLEMYIDLAPFLNPSPYIVPEDMSLAKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTENVNTLELQSTSVRNRHHNKRLMTRNSDVERPLLSGLLVDSE 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181500g00002 784 CDD CBS_pair_voltage-gated_CLC_euk_bac 581 738 - -
Stsc181500g00002 784 MobiDBLite consensus disorder prediction 640 666 - -
Stsc181500g00002 784 ProSiteProfiles CBS domain profile. 691 748 IPR000644 -
Stsc181500g00002 784 CDD ClC_6_like 46 559 - -
Stsc181500g00002 784 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 20 743 - -
Stsc181500g00002 784 Gene3D Clc chloride channel 69 560 - -
Stsc181500g00002 784 ProSiteProfiles CBS domain profile. 570 637 IPR000644 -
Stsc181500g00002 784 FunFam Chloride channel protein 683 774 - -
Stsc181500g00002 784 Pfam CBS domain 692 738 IPR000644 -
Stsc181500g00002 784 Pfam CBS domain 583 631 IPR000644 -
Stsc181500g00002 784 SUPERFAMILY Clc chloride channel 54 561 IPR014743 -
Stsc181500g00002 784 SMART cbs_1 694 742 IPR000644 -
Stsc181500g00002 784 SMART cbs_1 580 632 IPR000644 -
Stsc181500g00002 784 SUPERFAMILY CBS-domain pair 564 738 IPR046342 -
Stsc181500g00002 784 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 PRINTS Chloride channel signature 455 475 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 PRINTS Chloride channel signature 490 506 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 PRINTS Chloride channel signature 508 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 PRINTS Chloride channel signature 546 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 Pfam Voltage gated chloride channel 132 539 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Stsc181500g00002 784 PRINTS Plant CLC chloride channel signature 407 423 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc181500g00002 784 PRINTS Plant CLC chloride channel signature 277 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc181500g00002 784 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Stsc181500g00002 784 MobiDBLite consensus disorder prediction 648 666 - -
Stsc181500g00002 784 Gene3D - 579 744 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181500g00002 Stsc-Chr181500 2325 9626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181500g00002 1 757 Ion Channels AT5G26240 81.113 0.0 1199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181500g00002 K05016 - gmx:100811908 1381.7