Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181499g00009 ATGCCTCCAATAGTTTCACGCAAACCATCTTCACCACCACCAACACCATCATCATCATCATCTTGTGTTGTTCATGATCATGATCATGATGACAAAATCATCAACAAACAAAACAACTATGAGAGATCAACAACATGTAACGGTAACAACAATAATAGTAATAATGTTCTTGTTGATGTTAGGCATGTTACAAGGCAGAGGAAGTTGATTAGGCACCTTAAGGACAAAGAAGTGCTTGGTTTGATTCATTTGCACTCCACAGTCAATTGTTCTTCTTCTTTGTCGTCGGCGGAGCTGCCTATGTCGTGGAAATCTTGCTCGCGAGACATTAATTTTAGCAGCAGCTGCGGACACTGGTCTATTTCGGCCGTGCCGCAGCCGTTGCCACTCCCCGAGTCATCGACACTTATGATGACTCGGAGAGCTGAGTCAACCGGCCTCGGAGCAGGACATGTCCACCTACTACAATCTATTTCCATTGATCATCCTAGTTTGGCTTTGACTTTGAGGAAAACAGTGAACCATGGTGCATTGACATGTACAAAACCTTCAAGCAATTTGGATAGACTCTCTTCAGATCCTACAAGCCTAGCAAAAGCAAAAAATAATCTGAGAGTTCACATTCCAGCTAAAAGTTTCTTGGAAGGCAATAGTTCATGCAAAATGCCCCAATCAGTGTCTCATGAAGATGATGATGATTGTGTGAGTATTTCTGGTTTGAGCATGCATGTTTCTGCTAAGAGTGCTCCATCAAGTGTCTTCTCTAGTCCAGTCACTAGTCCACATCATCATCATGGATCAAACAACAACAACAATCAGCTACAACATTTCCTTCAAGAACTCATCAATGACAATTGTTACTTGAATTTGGATCATCATCTTCATCAACTACAACAAGCTAATAATAACAACAAAAATAATGTTCATCATAAAAATAATAACCATGCTTATGCACATCCCTTGCCACTTCCTCCTAGAGTTTCATCATCATCAATGGTGCAGCAACAAACATCTTTGCAGCTGCAATATCATAATTCAAGTGCTATGCAACATGTTTCATCAGAAAATCATCATCATCCACTACCTACTTCAATGAAAGGACAATGGCAGAAAGGGAAACTAATCGGTCGCGGAACCTTTGGAAGTGTTTATCATGCAACAAACCTAGAAACTGGAGCTTCTTGTGCAATGAAGGAGGTGGATATAATTCCTGATGATCCTACATCTGCTGAGTGCATAAAGCAATTAGAGCAGGAAATCAAAATCCTTGGTCAACTACACCACCCCAACATTGTGCAGTATTATGGAAGTGAAATAGTTGGTGATCATTTGTACATATATATGGAGTATGTTCATCCAGGATCAGTTAACAAATTCATTAGGGATCATTGTGGAGCTATGACAGAATCTGTTGTTAGAAATTTCACCAGACACATTCTCTCTGGATTGGCCTACTTACATAGCACCAAGACTATCCACAGGGATATCAAAGGTGCAAACTTGCTGGTTAATGAATCTGGTATTGTCAAGCTTGCAGATTTTGGGATGGCAAAAATTCTTTCAGGGAATTCATTTGAACTTTCTTTGAAGGGTAGTCCTTATTGGATGGCTCCTGAGGTGATGAAAGCTGCAATTAAGAATGAAACAAATCCTGATGTTGCCATGGCCATTGATATATGGAGCTTAGGCTGCACCATCATTGAAATGATGTCAGGAAAGCCTCCTTGGAGTGACTTTGAAGGGCCATCAGCAATGTTCAAGGTACTACACAGCACTCCACCAATACCTGAGAGTTTATCTTCAGTGGGAAAGGATTTTCTGCAGCAATGTTTCAGAAGGGACCCTGCTGAAAGACCTTCAGCAGCAATGCTTCTTAAGCATCCCTTTCTGCAAAATTTTCATGATCAAGATGCTTTAATTCATCCAAATTTGTGTAACAAAGGAGATCAAGGACAAGATGTAATGCCACCAGCCACCATTAGCACAAAGATTTTAAACAAAACTCAGAAATTAACGGGTGCTGAGGAATCTAAACAGATTATTATAGCTTCTCATCATAATAATCTTCAATCTTCATTTAAAGCTGGCAACCTATCCCTCCCTCACTCAAATTTGAAGCATGTCATGAGTTAA 2133 0.4013 MPPIVSRKPSSPPPTPSSSSSCVVHDHDHDDKIINKQNNYERSTTCNGNNNNSNNVLVDVRHVTRQRKLIRHLKDKEVLGLIHLHSTVNCSSSLSSAELPMSWKSCSRDINFSSSCGHWSISAVPQPLPLPESSTLMMTRRAESTGLGAGHVHLLQSISIDHPSLALTLRKTVNHGALTCTKPSSNLDRLSSDPTSLAKAKNNLRVHIPAKSFLEGNSSCKMPQSVSHEDDDDCVSISGLSMHVSAKSAPSSVFSSPVTSPHHHHGSNNNNNQLQHFLQELINDNCYLNLDHHLHQLQQANNNNKNNVHHKNNNHAYAHPLPLPPRVSSSSMVQQQTSLQLQYHNSSAMQHVSSENHHHPLPTSMKGQWQKGKLIGRGTFGSVYHATNLETGASCAMKEVDIIPDDPTSAECIKQLEQEIKILGQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSVNKFIRDHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVNESGIVKLADFGMAKILSGNSFELSLKGSPYWMAPEVMKAAIKNETNPDVAMAIDIWSLGCTIIEMMSGKPPWSDFEGPSAMFKVLHSTPPIPESLSSVGKDFLQQCFRRDPAERPSAAMLLKHPFLQNFHDQDALIHPNLCNKGDQGQDVMPPATISTKILNKTQKLTGAEESKQIIIASHHNNLQSSFKAGNLSLPHSNLKHVMS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181499g00009 710 ProSiteProfiles Protein kinase domain profile. 369 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181499g00009 710 Pfam Protein kinase domain 370 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181499g00009 710 FunFam Mitogen-activated protein kinase kinase kinase 5 366 665 - -
Stsc181499g00009 710 SMART serkin_6 369 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181499g00009 710 MobiDBLite consensus disorder prediction 1 16 - -
Stsc181499g00009 710 Gene3D Transferase(Phosphotransferase) domain 1 366 655 - -
Stsc181499g00009 710 SUPERFAMILY Protein kinase-like (PK-like) 356 639 IPR011009 -
Stsc181499g00009 710 ProSitePatterns Protein kinases ATP-binding region signature. 375 398 IPR017441 GO:0005524
Stsc181499g00009 710 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 55 639 - -
Stsc181499g00009 710 MobiDBLite consensus disorder prediction 248 271 - -
Stsc181499g00009 710 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Stsc181499g00009 710 PIRSF TyrPK_CSF1-R 365 478 - -
Stsc181499g00009 710 PIRSF TyrPK_CSF1-R 17 117 - -
Stsc181499g00009 710 PIRSF TyrPK_CSF1-R 454 692 - -
Stsc181499g00009 710 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181499g00009 Stsc-Chr181499 39521 46566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181499g00009 319 632 MAP Kinase Kinase Kinase AT5G66850 65.831 2.00e-151 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc181499g00009 Pkinase 4.9e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181499g00009 - - gmx:100819530 591.267