Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181499g00002 ATGAGGAGTAGGAAAGGTTTGTCCTTCTCCAGCTTAAAGTTTCTTCTCCTAATTATCACTGTTTTGCTACCACAACAAACTTGTGCAGCAGAGGATCATATTCATAACAGAACATGTAGCCCCTCCTCCTGCGGCAAGCTCACCAACATAACACATCCTTTCCGGCTTAAGGGCGACCCCGCAAACTGCGGCCATCCGGGCTACGAGTTGTCCTGTGAGAATAACATCACCCTCTTACAACTTTTCCACGGTAAAAGCTACCGTGTTGAAGCAATAAACTACAACAACTTCACCATCCGGATTGTGGATCCCGCCATCTCGGAGAATGACTGTTCTACCCTTCCTCACTATTCTTTATCCCGTTCCAATTTCAGTACCCTTGACGATGATAATTATTACGTCACGGTCCCTGAAATCGGAACGGGAAAATACGAATCTCTTCAGGAACGAGTTTTCTTAAATGGCTCCATCTCCACACAGGTGGAGAGCCAAGCAAGAATGTTCGAGCACGTGGTGTTGTTGAAGTGCAGCAATCCGGTGAGGGACGATCCACGGTACGTGGACACTGCACCTTGCATTAAACAAGAAGGAAGTAATAATAATAATGTTTATGCTGTTCTTGGAGACTTGGCGGTGGCTGAGTTAAGAGATGATTGCCGCGTGAAGATGATTGCAGCATCATCATTTCTTGTTCCAAGGAGATTGTGGCGTGATTCGGTGTTCATCGAAGAGAGGTTGTCATACGCTGAAATCCATAGGAAACTGAGTTATGGATTTGATGTTTCGTGGATGCAGAGCTTTGCTTGTGAAGATAAGTGTGGGATGAAGAATTATTGCTCATTCAATGAAATCACTCAAAATATCACATGTGGGGATCCAGATAACATTGTCTGTGATTATAATTCATTGTTGAATTACAAATGTGGACTTCGCAAAGTGGTAAACATGGATAGTGGTGAACACTTCTCTAAAAGAGATGTAATACCTGTTGTTAAGGTTGGATTGTTCATGGGATTGTTTTTTATGTCATACATAATCCTCAAACACACATTAGGTGTCATGTTTTTCTTCGCATTGTTGATGTACACGTTTCGACGAAGGCATTTATCAATCTATGAAAATATTGAGGATTTTCTGCAAGGAAACACTCTCATACCAATAAGATATTCATATAAAGACATAAAGAAGATGACTAGAGGTTTTAAGGAAAAACTTGGAGAAGGAGGATTTGGTGCAGTCTACAAAGGAAAGCTACAAAGTGGACCTTTTGTAGCCATAAAAATGTTAGGTAAAGCTAAAGCTAATGGCCAAGAATTTATCAGTGAAGTTGCCACCATTGGTAGAATACACCATGCCAATGTGGTAAGGCTTATTGGATTTTGTGTTGAGGGTTCAAAACGTGCTCTTATATATGAATTCATGCCGAATGGTTCTTTAGATAAATATATATTTTCCAAAGAAAAAAGTGTATCTCTAACTTCCGAAAAGATGTTTGAGATATCTATAGGAGTGGCACGAGGTATGGCTTATTTGCATGAAGGTTGTGACATGCAGATTTTGCATTTCGATATCAAGCCTCACAACATCCTTCTTGATGAGAATTTCATTCCAAAGGTCTCAGACTTTGGTCTTGCAAAGCTATATCCTCTTGATAATAGTATTGTAAGTTTGACTGCGGCAAGAGGAACAATTGGTTACATGGCTCCTGAATTGTTCTATCAAAATATTGGGGCAGTATCTTACAAGGCTGATGTCTATAGCTTTGGTATGCTTTTGATGGAAATGGCGAGTCAAAGAAGAAATATGAATCCACATGCAGAACATTCAAGCCAACTTTACTTTCCATTTTGGATTTATGATCAGTTGGCTGCAAAGAAAAATGATGAGATTGACATGGAAACTTTTAATGATGAAGAAAGGAATGAACTGGTAAAAAAGATGTTCATAACTGCATTATGGTGTATACAACTGAAGCCAAGTGATCGTCCTTCAATGAATAAAGTAGTAGAAATGTTAGAAGGAGACGTCACAAGCATTGAAATGCCTCCAAAGCCTTCATATTATCCAAATGATGTGATTCAAAGAGATGACTCACAAGTAAATGATTCAAGTAATTCTGATGTCACTTCAAGTTTTGAGGAAGAAAGTACAACCAACCCTTTGTTAAAGTTTTCTGGTTGA 2181 0.3934 MRSRKGLSFSSLKFLLLIITVLLPQQTCAAEDHIHNRTCSPSSCGKLTNITHPFRLKGDPANCGHPGYELSCENNITLLQLFHGKSYRVEAINYNNFTIRIVDPAISENDCSTLPHYSLSRSNFSTLDDDNYYVTVPEIGTGKYESLQERVFLNGSISTQVESQARMFEHVVLLKCSNPVRDDPRYVDTAPCIKQEGSNNNNVYAVLGDLAVAELRDDCRVKMIAASSFLVPRRLWRDSVFIEERLSYAEIHRKLSYGFDVSWMQSFACEDKCGMKNYCSFNEITQNITCGDPDNIVCDYNSLLNYKCGLRKVVNMDSGEHFSKRDVIPVVKVGLFMGLFFMSYIILKHTLGVMFFFALLMYTFRRRHLSIYENIEDFLQGNTLIPIRYSYKDIKKMTRGFKEKLGEGGFGAVYKGKLQSGPFVAIKMLGKAKANGQEFISEVATIGRIHHANVVRLIGFCVEGSKRALIYEFMPNGSLDKYIFSKEKSVSLTSEKMFEISIGVARGMAYLHEGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPLDNSIVSLTAARGTIGYMAPELFYQNIGAVSYKADVYSFGMLLMEMASQRRNMNPHAEHSSQLYFPFWIYDQLAAKKNDEIDMETFNDEERNELVKKMFITALWCIQLKPSDRPSMNKVVEMLEGDVTSIEMPPKPSYYPNDVIQRDDSQVNDSSNSDVTSSFEEESTTNPLLKFSG 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181499g00002 726 Gene3D Transferase(Phosphotransferase) domain 1 474 687 - -
Stsc181499g00002 726 CDD STKc_IRAK 405 674 - -
Stsc181499g00002 726 ProSitePatterns Protein kinases ATP-binding region signature. 405 427 IPR017441 GO:0005524
Stsc181499g00002 726 Pfam Wall-associated receptor kinase galacturonan-binding 39 103 IPR025287 GO:0030247
Stsc181499g00002 726 SMART serkin_6 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181499g00002 726 ProSiteProfiles Protein kinase domain profile. 399 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181499g00002 726 Gene3D Phosphorylase Kinase; domain 1 367 473 - -
Stsc181499g00002 726 MobiDBLite consensus disorder prediction 692 726 - -
Stsc181499g00002 726 MobiDBLite consensus disorder prediction 680 726 - -
Stsc181499g00002 726 SUPERFAMILY Protein kinase-like (PK-like) 385 673 IPR011009 -
Stsc181499g00002 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Stsc181499g00002 726 FunFam PR5-like receptor kinase 474 684 - -
Stsc181499g00002 726 FunFam serine/threonine-protein kinase PBS1-like 371 473 - -
Stsc181499g00002 726 PANTHER RUST RESISTANCE KINASE LR10-RELATED 372 696 IPR045874 GO:0004672
Stsc181499g00002 726 Pfam Protein tyrosine and serine/threonine kinase 401 672 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181499g00002 Stsc-Chr181499 2323 5451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181499g00002 10 688 Receptor kinase-like Gene Family AT5G38260 34.157 4.14e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc181499g00002 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181499g00002 - - adu:110273082 899.812