Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181498g00002 ATGGCCAAGTTAAGTGTCAGAAGCATAAAGAAGAGTAGTAGTACTAATAATGGAATTGTGAAGTTGAGGTTTGTGGTGGAGAAACTAATTCATAAGAGTTTGTTAATGGGGAGTAACAAGAAGTCATCATCAAGTAGTGTGCCTGAGGATGTGAAAGAAGGGCATTTTGCTGTGATTGCTGAGGGAGGTGGTGGTGGTGATGATGAGGAAGGGCCAAAGAGGTTTGTGATGCCACTGAGCTGTTTGAGAAACCCAGCATTCTTGAGGCTATTGGAGCAGGCTGAAGAGGAGTATGGGTTTGACCATGAAGGTGCACTCACCATTCCATGCACCCCTTCTCAGCTTCAAAGGATACTACTACTAGAACAGCAACAAACTATCAACAAGAACAACCACCTATTCACCTTCTCAACTAATAACCACCTCCAATTCATCATCTCATAA 444 0.4302 MAKLSVRSIKKSSSTNNGIVKLRFVVEKLIHKSLLMGSNKKSSSSSVPEDVKEGHFAVIAEGGGGGDDEEGPKRFVMPLSCLRNPAFLRLLEQAEEEYGFDHEGALTIPCTPSQLQRILLLEQQQTINKNNHLFTFSTNNHLQFIIS 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181498g00002 147 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 40 119 IPR003676 GO:0009733
Stsc181498g00002 147 Pfam Auxin responsive protein 39 119 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181498g00002 Stsc-Chr181498 3671 4114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181498g00002 11 119 Calmodulin-binding Proteins AT3G43120 36.752 4.88e-14 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181498g00002 K14488 - aip:107612303 200.675