Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181498g00001 ATGGAGCGTGGTGGTCTTACAGAGAAGGTGAGTAGGGACAAAGTTTTGGTATTCCGCTTTGTGGATGTGGGAAAACTTCCCCCTCCTGTCCTCCAGTTTGTTGAGGTGGCATTTGGTTACACTCCTGAGAATCTCATATACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTGGTTGGACCCAACGGAGCTGGGAAGAGTACATTACTTAAGTTAATGACAGGTGAACTGGTTCCTACAGATGGCATGGTTCGACGCCATAATCATCTTAGAATTGCACAATATCACCAGCATTTAGCCGAAAAGCTAGACATGGAAATGTCAGCTCTCCTGTATATGATGAGAGAATACCCTGGAAACGAGGAAGAGAGGATGAGAGCTGCTATTGGGAAGTTTGGACTATCGGGTAAAGCCCAGGTGATGCCCATGAAGAATTTATCTGACGGGCAGAGGAGCCGTGTGATATTTGCATGGTTAGCCTATAGGCAGCCTCACATGCTACTCTTGGATGAGCCAACCAATCATTTGGATATTGAGACGATTGATTCGTTGGCGGAGGCATTGAATGAATGGGATGGTGGGATGGTGCTTGTTAGCCATGATTTTAGGCTCATAAACCAGGTGGCTCATGAGATATGGGTGTGCGCAGATCAAAGCGTCACCAGATGGGAAGGCGATATTATGGATTTCAAGCAGCATCTAAAGGCAAAAGCGGGTTTATCTGACTGA 741 0.4602 MERGGLTEKVSRDKVLVFRFVDVGKLPPPVLQFVEVAFGYTPENLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGELVPTDGMVRRHNHLRIAQYHQHLAEKLDMEMSALLYMMREYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHMLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQSVTRWEGDIMDFKQHLKAKAGLSD 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181498g00001 246 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 31 246 IPR003439 GO:0005524
Stsc181498g00001 246 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 2 241 - -
Stsc181498g00001 246 CDD ABCF_EF-3 31 222 - -
Stsc181498g00001 246 Pfam ABC transporter 47 178 IPR003439 GO:0005524
Stsc181498g00001 246 SMART AAA_5 56 244 IPR003593 GO:0016887
Stsc181498g00001 246 Gene3D - 8 244 IPR027417 -
Stsc181498g00001 246 FunFam ATP-binding cassette sub-family F member 3 1 245 - -
Stsc181498g00001 246 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 225 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181498g00001 Stsc-Chr181498 1 1340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181498g00001 31 224 Calmodulin-binding Proteins AT2G36910 25.000 7.95e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181498g00001 K06185 - pvy:116144971 479.559