Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181497g00006 | ATGGCAAGGATATCGAGGTCCTCTACGCCGCGCCTGCTCTACACCTTCTTCACCTCCACCGCGACCTCTGCGTCCCCTGTGCCGTCTCCGTCCCCGGCGTCCTCCCTCCTCGCCGGCGCCTTCCACCTGCGGCACTTCTCGTCTGGCAACGCTGCTCGCGCGAAGGCGGCTACGACGGATAAGGAGCCATGGTGGAAGGAGTCTATGGAGAGGTTACGCAACATCGGGATCTCAGCTCACATCGACTCTGGCAAGACAACTTTGACGGAGCGGGTGCTTTTCTACACCGGTCGTATCCATGAGATCCACGAGGTTCGGGGCAGAGACGGCGTCGGCGCCAAGATGGATTCCATGGACTTGGAGAGGGAGAAAGGAATCACTATCCAGTCTGCAGCTACTTACTGCTCTTGGAAAGACTACAAGATTAACATAATTGACACACCTGGTCACGTTGATTTCACCATTGAAGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCTATTCTTGTACTTTGCAGTGTTGGTGGTGTGCAAAGTCAGTCCATTACAGTAGATCGACAAATGAGAAGATACGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGGATGGGAGCAGATCCATGGAAAGTCTTAAATCAGGCACGAACTAAGCTTCGGCATCATAGTGCTGCAATGCAAGTTCCAATAGGCTTGGAGGATGATTTTGAGGGACTTGTTGATCTTGTGCAGTTAAAAGCATACTATTTTCGCGGTTCTAATGGTGAAAAAGTTGTCACTGAAGAGGTGCCTGGAGATATGGAAGCCTTGGTAGCAGAAAAAAGGCGCGAGCTCATAGAAGCTGTGTCAGAAGTTGATGATCAACTTGCTGAAGCTTTCCTTGGTGATGAGCCCATATCACCTGCTGACCTTCAGGAAGCAATTCGTAGGGCCACCATAGCACGGAAGTTTGTACCTGTTTTCATGGGTAGTGCTTTTAAAAATAAGGGGGTACAGCCACTTCTGGATGGTGTACTTGATTATTTGCCATGTCCAATTGAAGTTAGTAGTTATGCCCTTGACCAAACAAAGAATGAGGAAAAGGTTGAGTTGACTGGAAGTCCTGATGGGCCCCTTGTAGCATTGGCATTTAAGTTGGAGGAAGGGCGGTTTGGCCAGTTAACATATTTAAGAATTTATGAGGGTGTGATCCGAAAGGGAGAGTTTATTATAAATGTAAACACCGGCAAGAAGATCAAGGTTCCTCGCTTAGTTAGGATGCATTCTGATGAGATGGAGGACATTCAAGAGGCTCATGCAGGGCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACATTTACTGATGGGTCAGTTAAATACACAATGACTTCCATGAATGTTCCTGAACCTGTAATGTCATTAGCTGTACAGCCAGTTTCAAAAGATTCTGGAGGGCAAACTATCATTTCTGGAATGGGAGAACTACACTTAGATATTTATGTTGAACGTATCAGGAGAGAGTATAAGGTTGATGCAACTGTTGGAAAGCCCCGTGTAAACTTCAGAGAAACTGTTACACAACGTGCTGATTTTGATTATTTACACAAGAAGCAAACTGGAGGGCAAGGTCAATATGGACGGGTAATCGGGTATATTGAACCACTTCCAGCAGGATCACCAGCCAAATTTGAATTTGAAAACCACCTTGTCGGGCAAGCTATTCCATCAAATTTTATTCCTGCAATTGAAAAAGGTTTTAAGGAAGCCGCCAATTCGGGGGCTTTAATTGGACATCCAGTCGAAAATCTTAGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCTAGTGAACTTGCATTTAAGTTGGCTTCTATCTATGCTTTCAGACAGTGCTATGCAGCTTCCAGGCCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTCCAAGGAGCTGTTGCTGGTGACATTAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGAAGGTGATGACTCTATCATCACTGCCCATGTCCCTCTTAACAATATGTTTGGGTATTCTACGGCTCTTCGTTCAATGACGCAGGGGAAAGGTGAGTTCACAATGGAATACAAGGAACATTCACCTGTATCTCATGATGTACAGACGCAGTTAATAAATGCCTACAAGGGCAAGGCAGCTGAATGA | 2208 | 0.457 | MARISRSSTPRLLYTFFTSTATSASPVPSPSPASSLLAGAFHLRHFSSGNAARAKAATTDKEPWWKESMERLRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCSWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARTKLRHHSAAMQVPIGLEDDFEGLVDLVQLKAYYFRGSNGEKVVTEEVPGDMEALVAEKRRELIEAVSEVDDQLAEAFLGDEPISPADLQEAIRRATIARKFVPVFMGSAFKNKGVQPLLDGVLDYLPCPIEVSSYALDQTKNEEKVELTGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGEFIINVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFRETVTQRADFDYLHKKQTGGQGQYGRVIGYIEPLPAGSPAKFEFENHLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSIITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLINAYKGKAAE | 735 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181497g00006 | 735 | CDD | mtEFG1_C | 641 | 718 | IPR035649 | - | |
Stsc181497g00006 | 735 | Gene3D | Translation factors | 354 | 476 | - | - | |
Stsc181497g00006 | 735 | FunFam | Elongation factor G, mitochondrial | 355 | 468 | - | - | |
Stsc181497g00006 | 735 | Pfam | Elongation Factor G, domain III | 482 | 514 | IPR041095 | - | |
Stsc181497g00006 | 735 | PRINTS | GTP-binding elongation factor signature | 74 | 87 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181497g00006 | 735 | PRINTS | GTP-binding elongation factor signature | 195 | 204 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181497g00006 | 735 | PRINTS | GTP-binding elongation factor signature | 123 | 131 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181497g00006 | 735 | PRINTS | GTP-binding elongation factor signature | 143 | 153 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181497g00006 | 735 | PRINTS | GTP-binding elongation factor signature | 159 | 170 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181497g00006 | 735 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 70 | 347 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181497g00006 | 735 | Gene3D | - | 520 | 726 | IPR014721 | - | |
Stsc181497g00006 | 735 | SUPERFAMILY | EF-G C-terminal domain-like | 465 | 517 | IPR035647 | - | |
Stsc181497g00006 | 735 | SUPERFAMILY | EF-G C-terminal domain-like | 638 | 729 | IPR035647 | - | |
Stsc181497g00006 | 735 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 477 | 519 | - | - | |
Stsc181497g00006 | 735 | SMART | EFG_C_a | 638 | 725 | IPR000640 | - | |
Stsc181497g00006 | 735 | SMART | EFG_IV_2 | 516 | 636 | IPR005517 | GO:0005525 | |
Stsc181497g00006 | 735 | Pfam | Elongation factor G, domain IV | 515 | 635 | IPR005517 | GO:0005525 | |
Stsc181497g00006 | 735 | Gene3D | - | 642 | 712 | - | - | |
Stsc181497g00006 | 735 | CDD | mtEFG1_II_like | 373 | 453 | - | - | |
Stsc181497g00006 | 735 | SUPERFAMILY | Translation proteins | 311 | 463 | IPR009000 | - | |
Stsc181497g00006 | 735 | Gene3D | - | 59 | 349 | IPR027417 | - | |
Stsc181497g00006 | 735 | NCBIfam | small GTP-binding protein domain | 72 | 244 | IPR005225 | GO:0005525 | |
Stsc181497g00006 | 735 | Pfam | Elongation factor Tu domain 2 | 386 | 452 | IPR004161 | GO:0005525 | |
Stsc181497g00006 | 735 | FunFam | Elongation factor G | 521 | 658 | - | - | |
Stsc181497g00006 | 735 | CDD | EF-G | 74 | 346 | - | - | |
Stsc181497g00006 | 735 | Pfam | Elongation factor G C-terminus | 639 | 724 | IPR000640 | - | |
Stsc181497g00006 | 735 | PANTHER | ELONGATION FACTOR G, MITOCHONDRIAL | 6 | 728 | - | - | |
Stsc181497g00006 | 735 | Pfam | Elongation factor Tu GTP binding domain | 71 | 344 | IPR000795 | GO:0003924|GO:0005525 | |
Stsc181497g00006 | 735 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 69 | 344 | IPR027417 | - | |
Stsc181497g00006 | 735 | FunFam | Elongation factor G | 642 | 712 | - | - | |
Stsc181497g00006 | 735 | FunFam | Elongation factor G, mitochondrial | 63 | 350 | - | - | |
Stsc181497g00006 | 735 | CDD | EFG_mtEFG1_IV | 519 | 634 | IPR005517 | GO:0005525 | |
Stsc181497g00006 | 735 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 515 | 637 | IPR020568 | - | |
Stsc181497g00006 | 735 | Hamap | Elongation factor G [fusA]. | 68 | 729 | IPR004540 | GO:0003746|GO:0005525|GO:0006414 | |
Stsc181497g00006 | 735 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 116 | 131 | IPR031157 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181497g00006 | Stsc-Chr181497 | 27836 | 40638 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181497g00006 | 71 | 205 | Eukaryotic Initiation Factors Gene Family | AT3G22980 | 37.037 | 1.29e-19 | 92.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181497g00006 | K02355 | - | gmx:100783315 | 1316.98 |