Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181497g00006 ATGGCAAGGATATCGAGGTCCTCTACGCCGCGCCTGCTCTACACCTTCTTCACCTCCACCGCGACCTCTGCGTCCCCTGTGCCGTCTCCGTCCCCGGCGTCCTCCCTCCTCGCCGGCGCCTTCCACCTGCGGCACTTCTCGTCTGGCAACGCTGCTCGCGCGAAGGCGGCTACGACGGATAAGGAGCCATGGTGGAAGGAGTCTATGGAGAGGTTACGCAACATCGGGATCTCAGCTCACATCGACTCTGGCAAGACAACTTTGACGGAGCGGGTGCTTTTCTACACCGGTCGTATCCATGAGATCCACGAGGTTCGGGGCAGAGACGGCGTCGGCGCCAAGATGGATTCCATGGACTTGGAGAGGGAGAAAGGAATCACTATCCAGTCTGCAGCTACTTACTGCTCTTGGAAAGACTACAAGATTAACATAATTGACACACCTGGTCACGTTGATTTCACCATTGAAGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCTATTCTTGTACTTTGCAGTGTTGGTGGTGTGCAAAGTCAGTCCATTACAGTAGATCGACAAATGAGAAGATACGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGGATGGGAGCAGATCCATGGAAAGTCTTAAATCAGGCACGAACTAAGCTTCGGCATCATAGTGCTGCAATGCAAGTTCCAATAGGCTTGGAGGATGATTTTGAGGGACTTGTTGATCTTGTGCAGTTAAAAGCATACTATTTTCGCGGTTCTAATGGTGAAAAAGTTGTCACTGAAGAGGTGCCTGGAGATATGGAAGCCTTGGTAGCAGAAAAAAGGCGCGAGCTCATAGAAGCTGTGTCAGAAGTTGATGATCAACTTGCTGAAGCTTTCCTTGGTGATGAGCCCATATCACCTGCTGACCTTCAGGAAGCAATTCGTAGGGCCACCATAGCACGGAAGTTTGTACCTGTTTTCATGGGTAGTGCTTTTAAAAATAAGGGGGTACAGCCACTTCTGGATGGTGTACTTGATTATTTGCCATGTCCAATTGAAGTTAGTAGTTATGCCCTTGACCAAACAAAGAATGAGGAAAAGGTTGAGTTGACTGGAAGTCCTGATGGGCCCCTTGTAGCATTGGCATTTAAGTTGGAGGAAGGGCGGTTTGGCCAGTTAACATATTTAAGAATTTATGAGGGTGTGATCCGAAAGGGAGAGTTTATTATAAATGTAAACACCGGCAAGAAGATCAAGGTTCCTCGCTTAGTTAGGATGCATTCTGATGAGATGGAGGACATTCAAGAGGCTCATGCAGGGCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACATTTACTGATGGGTCAGTTAAATACACAATGACTTCCATGAATGTTCCTGAACCTGTAATGTCATTAGCTGTACAGCCAGTTTCAAAAGATTCTGGAGGGCAAACTATCATTTCTGGAATGGGAGAACTACACTTAGATATTTATGTTGAACGTATCAGGAGAGAGTATAAGGTTGATGCAACTGTTGGAAAGCCCCGTGTAAACTTCAGAGAAACTGTTACACAACGTGCTGATTTTGATTATTTACACAAGAAGCAAACTGGAGGGCAAGGTCAATATGGACGGGTAATCGGGTATATTGAACCACTTCCAGCAGGATCACCAGCCAAATTTGAATTTGAAAACCACCTTGTCGGGCAAGCTATTCCATCAAATTTTATTCCTGCAATTGAAAAAGGTTTTAAGGAAGCCGCCAATTCGGGGGCTTTAATTGGACATCCAGTCGAAAATCTTAGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCTAGTGAACTTGCATTTAAGTTGGCTTCTATCTATGCTTTCAGACAGTGCTATGCAGCTTCCAGGCCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTCCAAGGAGCTGTTGCTGGTGACATTAACAAGAGAAAAGGTGTGATTGTTGGCAATGATCAGGAAGGTGATGACTCTATCATCACTGCCCATGTCCCTCTTAACAATATGTTTGGGTATTCTACGGCTCTTCGTTCAATGACGCAGGGGAAAGGTGAGTTCACAATGGAATACAAGGAACATTCACCTGTATCTCATGATGTACAGACGCAGTTAATAAATGCCTACAAGGGCAAGGCAGCTGAATGA 2208 0.457 MARISRSSTPRLLYTFFTSTATSASPVPSPSPASSLLAGAFHLRHFSSGNAARAKAATTDKEPWWKESMERLRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCSWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARTKLRHHSAAMQVPIGLEDDFEGLVDLVQLKAYYFRGSNGEKVVTEEVPGDMEALVAEKRRELIEAVSEVDDQLAEAFLGDEPISPADLQEAIRRATIARKFVPVFMGSAFKNKGVQPLLDGVLDYLPCPIEVSSYALDQTKNEEKVELTGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGEFIINVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQTIISGMGELHLDIYVERIRREYKVDATVGKPRVNFRETVTQRADFDYLHKKQTGGQGQYGRVIGYIEPLPAGSPAKFEFENHLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDINKRKGVIVGNDQEGDDSIITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLINAYKGKAAE 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181497g00006 735 CDD mtEFG1_C 641 718 IPR035649 -
Stsc181497g00006 735 Gene3D Translation factors 354 476 - -
Stsc181497g00006 735 FunFam Elongation factor G, mitochondrial 355 468 - -
Stsc181497g00006 735 Pfam Elongation Factor G, domain III 482 514 IPR041095 -
Stsc181497g00006 735 PRINTS GTP-binding elongation factor signature 74 87 IPR000795 GO:0003924|GO:0005525
Stsc181497g00006 735 PRINTS GTP-binding elongation factor signature 195 204 IPR000795 GO:0003924|GO:0005525
Stsc181497g00006 735 PRINTS GTP-binding elongation factor signature 123 131 IPR000795 GO:0003924|GO:0005525
Stsc181497g00006 735 PRINTS GTP-binding elongation factor signature 143 153 IPR000795 GO:0003924|GO:0005525
Stsc181497g00006 735 PRINTS GTP-binding elongation factor signature 159 170 IPR000795 GO:0003924|GO:0005525
Stsc181497g00006 735 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 70 347 IPR000795 GO:0003924|GO:0005525
Stsc181497g00006 735 Gene3D - 520 726 IPR014721 -
Stsc181497g00006 735 SUPERFAMILY EF-G C-terminal domain-like 465 517 IPR035647 -
Stsc181497g00006 735 SUPERFAMILY EF-G C-terminal domain-like 638 729 IPR035647 -
Stsc181497g00006 735 Gene3D Elongation Factor G (Translational Gtpase), domain 3 477 519 - -
Stsc181497g00006 735 SMART EFG_C_a 638 725 IPR000640 -
Stsc181497g00006 735 SMART EFG_IV_2 516 636 IPR005517 GO:0005525
Stsc181497g00006 735 Pfam Elongation factor G, domain IV 515 635 IPR005517 GO:0005525
Stsc181497g00006 735 Gene3D - 642 712 - -
Stsc181497g00006 735 CDD mtEFG1_II_like 373 453 - -
Stsc181497g00006 735 SUPERFAMILY Translation proteins 311 463 IPR009000 -
Stsc181497g00006 735 Gene3D - 59 349 IPR027417 -
Stsc181497g00006 735 NCBIfam small GTP-binding protein domain 72 244 IPR005225 GO:0005525
Stsc181497g00006 735 Pfam Elongation factor Tu domain 2 386 452 IPR004161 GO:0005525
Stsc181497g00006 735 FunFam Elongation factor G 521 658 - -
Stsc181497g00006 735 CDD EF-G 74 346 - -
Stsc181497g00006 735 Pfam Elongation factor G C-terminus 639 724 IPR000640 -
Stsc181497g00006 735 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 6 728 - -
Stsc181497g00006 735 Pfam Elongation factor Tu GTP binding domain 71 344 IPR000795 GO:0003924|GO:0005525
Stsc181497g00006 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 344 IPR027417 -
Stsc181497g00006 735 FunFam Elongation factor G 642 712 - -
Stsc181497g00006 735 FunFam Elongation factor G, mitochondrial 63 350 - -
Stsc181497g00006 735 CDD EFG_mtEFG1_IV 519 634 IPR005517 GO:0005525
Stsc181497g00006 735 SUPERFAMILY Ribosomal protein S5 domain 2-like 515 637 IPR020568 -
Stsc181497g00006 735 Hamap Elongation factor G [fusA]. 68 729 IPR004540 GO:0003746|GO:0005525|GO:0006414
Stsc181497g00006 735 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 116 131 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181497g00006 Stsc-Chr181497 27836 40638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181497g00006 71 205 Eukaryotic Initiation Factors Gene Family AT3G22980 37.037 1.29e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181497g00006 K02355 - gmx:100783315 1316.98