Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181496g00002 ATGGAAACTGAGAAAACTGATGTTTCAAAGGCTGAAGAATTCAAACAGCTTGCCAATGAAGCATTCAATGCACGGAAATATTCCCAAGCCATTGATTTATATACACAAGCAATTGAGCTGAACAGTCGCAATGCTGTTTACTGGGCTAATCGTGCCTTCGCTCATCTTCGGCTTGAAGAATATGGTAGTGCGATACAGGATGCTACAACGGCTATTGAAGTTGATCCCAAATATTCAAAGGGCTATTACAGAAGAGGTGCTGCTCATCTTGGGTTGGGAAAATTCAAGGATGCACTTAAGGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAGGCTGTTATGAAACTTAAATTTGAAGAAGCCATTGCTGCACCAGAGTCTGAAAGGCGTTCAGTAGCTGAATCTATAGATTATCATTCAATAGGAAAGGGCCACAATTCTTCGGTGTCTACCGAAGTGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGCGTTGGTGATGTTCAAGACATCAAAGGCCACAATAATAAGTGCAATTGTGATTGGTTTGCTGTTGCTCCTTGGGGCATATTGGTGGAGTGGCCGCAATACTGATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTAGTTACTTTGGATTTTGTAAAGAAAATGATGGAGGATTTCAAGAATCAGAAGTGCTTACATAAACGGTATGCTTTCCAAATTGTATTGCAAACTAGAGAGTTGTTGCAAGCCTTGCCTTCTCTCGTTGATATAAAAGTTCCTGATGGAAAACATTTCACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTGAATATTTTTGAGCTTAATGGACTTCCGTCAGACGATAATCCATATCTATTCAACGGCGACTTTGTGGATAGAGGATCTTTCTCTTTGGAAGTCATCCTCACTCTGTTCGCGTTTAAATGCATGTCTCCATCAGCAATATACCTAGCTAGAGGGAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGCGAGGTGCGCTCAAAGTTGAGTGACACATTTGTGGAACTATTTGCCGAAGTATTTTGTTATTTGCCTTTGGCTCATGTGATAAATTCGAAAGTTTTTGTCGTTCATGGGGGTCTCTTTAGTGTTGATGGGGTGAAACTATCTGACATACGAGCGATAAATCGGTTTTGTGAGCCTCCAGAAGAAGGACTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGACGAGGCCCGAGCAAGCGTGGTGTAGGTCTTTCTTTTGGTGCAGATGTGACGAAACGGTTTTTGCAAGAAAATAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAAATTGAGCATGATGGTAAACTCATAACTGTTTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCTTTTATTCGATTTGAAGCTCCTGATTTAAAACCCAACATTGTCACATTCACAGCAGTGCCACATCCTGATGTCAAGCCAATGGCTTATGCAAACAACTTCCTCCGGATGTTCTCATAA 1620 0.4142 METEKTDVSKAEEFKQLANEAFNARKYSQAIDLYTQAIELNSRNAVYWANRAFAHLRLEEYGSAIQDATTAIEVDPKYSKGYYRRGAAHLGLGKFKDALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAAPESERRSVAESIDYHSIGKGHNSSVSTEVAIAAVTVAVMAALVMFKTSKATIISAIVIGLLLLLGAYWWSGRNTDVEPQYSGARIEGDVVTLDFVKKMMEDFKNQKCLHKRYAFQIVLQTRELLQALPSLVDIKVPDGKHFTVCGDVHGQFYDLLNIFELNGLPSDDNPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSDTFVELFAEVFCYLPLAHVINSKVFVVHGGLFSVDGVKLSDIRAINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFTAVPHPDVKPMAYANNFLRMFS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181496g00002 539 SMART pp2a_7 245 521 IPR006186 GO:0016787
Stsc181496g00002 539 Pfam PPP5 TPR repeat region 210 269 IPR013235 -
Stsc181496g00002 539 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Stsc181496g00002 539 FunFam Serine/threonine-protein phosphatase 5 203 538 - -
Stsc181496g00002 539 CDD MPP_PP5_C 217 532 IPR041753 -
Stsc181496g00002 539 Pfam Tetratricopeptide repeat 16 78 - -
Stsc181496g00002 539 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 532 - -
Stsc181496g00002 539 SUPERFAMILY Metallo-dependent phosphatases 226 533 IPR029052 -
Stsc181496g00002 539 Pfam Calcineurin-like phosphoesterase 277 471 IPR004843 GO:0016787
Stsc181496g00002 539 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Stsc181496g00002 539 Gene3D - 205 538 IPR029052 -
Stsc181496g00002 539 SMART tpr_5 11 44 IPR019734 GO:0005515
Stsc181496g00002 539 SMART tpr_5 45 78 IPR019734 GO:0005515
Stsc181496g00002 539 SMART tpr_5 79 112 IPR019734 GO:0005515
Stsc181496g00002 539 Gene3D Tetratricopeptide repeat domain 2 159 IPR011990 GO:0005515
Stsc181496g00002 539 PIRSF PPPtase_5 1 539 - -
Stsc181496g00002 539 SUPERFAMILY TPR-like 6 137 IPR011990 GO:0005515
Stsc181496g00002 539 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Stsc181496g00002 539 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Stsc181496g00002 539 PRINTS Serine/threonine phosphatase family signature 307 334 IPR006186 GO:0016787
Stsc181496g00002 539 PRINTS Serine/threonine phosphatase family signature 340 364 IPR006186 GO:0016787
Stsc181496g00002 539 PRINTS Serine/threonine phosphatase family signature 404 431 IPR006186 GO:0016787
Stsc181496g00002 539 PRINTS Serine/threonine phosphatase family signature 374 400 IPR006186 GO:0016787
Stsc181496g00002 539 PRINTS Serine/threonine phosphatase family signature 277 304 IPR006186 GO:0016787
Stsc181496g00002 539 PRINTS Serine/threonine phosphatase family signature 460 480 IPR006186 GO:0016787
Stsc181496g00002 539 PRINTS Serine/threonine phosphatase family signature 482 498 IPR006186 GO:0016787
Stsc181496g00002 539 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181496g00002 Stsc-Chr181496 20808 29348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181496g00002 252 461 Calmodulin-binding Proteins AT5G63870 35.102 6.26e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181496g00002 K04460 - gmx:100820099 984.171