Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181493g00003 ATGGTGAGGTCTCAATGCTGTGATAAAATTAGTGTCAAGAGGGATGTTTGGAGTCGAGAAGAAGATGCAAAGATACTTGCATCTATGTCAAAGCATGGATCTAGTAACTGGACTTCTGTCCCCAAAAAAACGGCGCTCAAGAGGTGTGGAAAAAGTTGCAGGCTTCGGTGGACCAATAATTATCTCAGACCTGATCTTAAGCATGACACATTTACATCCCAAGAAGAGGATCTCATCATCAAGCTTCACGCAGCCATAGGTAGCAGGTGGTTCATAATAGCCCAACAACTACCTGGAAGAACAGACAATGATGTGAAGAACTATTGGAACACAAAGCTGAAAAAGAAGCTCTCTCAAATGGGAATAGACCCTGTTACTCATAAGCCCTTCTCAAAACTGATTGCTGACTATGGAAACATTGAGGGTTCTCATGGCCAAAAACAACCAACTACACAGAATAGCTCTATCAACAACAAAGACTTAAAAAAAAGTTCATTTCACTTAAATTCAGAGCAATACCAAACCCTGAAGCCACAGGGGTTTACTACTAGAATCACCAACGATAATAATAATAGCCAACAGCAAGCAATGCAAATGGAACCAGTTACTGATGAAACCAATAATCTTTCAATGGATCTTACAATGACACCAACAGTTATAGGTTCCACAAATTGCTGCATTGACACTGAGAGTCATGAGACCATTACTTCTTTGTCTTCTTCAACTTGTTCCACTATGGCGCAAGAAGCCTCTCCAGTGGCATCGCATTTCCGTTGGAATGACTTCCTTCTAGAAGACGCCTTTGTGCCAACTACTGCTGATAACAATGATCAAGAAATGGTGGCGGCTGGTTTCTTGTCGAAGGAGTTACTTGTATGCCGAATTGAGAATGTATCGAGACTAAGTTGGAACAAGAAAGAAGTGAAATCACAGCAAGAAGCAATAAGCAATAATGACTTTGAGCTCTCATCATCATCGTCATCTTCATGTGAAACTTCGTTTGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTTTGAGTTTTCCTCACCTTATGGAGGAACCATCTCACTACTAA 1080 0.4065 MVRSQCCDKISVKRDVWSREEDAKILASMSKHGSSNWTSVPKKTALKRCGKSCRLRWTNNYLRPDLKHDTFTSQEEDLIIKLHAAIGSRWFIIAQQLPGRTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIEGSHGQKQPTTQNSSINNKDLKKSSFHLNSEQYQTLKPQGFTTRITNDNNNSQQQAMQMEPVTDETNNLSMDLTMTPTVIGSTNCCIDTESHETITSLSSSTCSTMAQEASPVASHFRWNDFLLEDAFVPTTADNNDQEMVAAGFLSKELLVCRIENVSRLSWNKKEVKSQQEAISNNDFELSSSSSSSCETSFVEAMLDQENEMFLSFPHLMEEPSHY 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181493g00003 359 CDD SANT 17 60 IPR001005 -
Stsc181493g00003 359 PANTHER F14D16.11-RELATED 1 359 - -
Stsc181493g00003 359 Gene3D - 7 68 - -
Stsc181493g00003 359 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc181493g00003 359 FunFam MYB-related transcription factor 13 67 - -
Stsc181493g00003 359 Gene3D - 69 133 - -
Stsc181493g00003 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc181493g00003 359 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc181493g00003 359 FunFam Os07g0634900 protein 70 129 - -
Stsc181493g00003 359 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Stsc181493g00003 359 Pfam Myb-like DNA-binding domain 14 59 IPR001005 -
Stsc181493g00003 359 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc181493g00003 359 SMART sant 67 115 IPR001005 -
Stsc181493g00003 359 SMART sant 13 63 IPR001005 -
Stsc181493g00003 359 CDD SANT 70 113 IPR001005 -
Stsc181493g00003 359 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 59 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181493g00003 Stsc-Chr181493 35305 39303 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181493g00003 1 355 MYB Transcription Factor Family AT3G28470 41.096 5.06e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181493g00003 Myb_DNA-binding 4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181493g00003 K09422 - gmx:100795381 340.117