Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181492g00003 ATGGAGAGGGCGACACCCATGAAGACGAAGAACTACCGTAGTAGACCAGTGTACCTGAGTGCGTCGTTATTGTGCTGCAAGCTCTACGTCTTGATGTCGTCCCCATTGATGCGCCAGTGCGTCGTCTCTATGCGTCGTTGCAGTTCTATCGTCGCCAGTTGTTATTTATTTTTGGTTAAAAAGGGGGCATACCTTATTCTATCATTGTCATTGATGCCATGTTCATATGTATTGTTCACACTCTTGGAGCATCATGTGAATTTAAATTCACAGAAAGTTCTCTTTCAATTCCACTCGGAAATTACGGCATTGGAGACACTCATACAGCCCATGAATTCTTCCTCCAACCATCTAGCAAGATTTCTAAATTCAGCTTTCCATGCTACCAACATCTCATCATTCTCTGATATTAAGACAAAGGTGGCTCCATTATTATATGAAACATTTGAGACAGTTCCTCAGTTAGCCCAAATCTCATACATAGGAATGGAAGGTTACTTTTTTTCAATCTACAATGATGAAGATGGTCAACCTCTGGCAATATACTCAAATTGTTCAACATCTTCTATTATTTCTAAACATTATTATGTTCAACCAGTAAATCGTGATAGTGGAAAATTATATGGGAATGCAACAATATTTGAGCCATATATTAATGCAACTTGGGTTGGGGAAGCTCTACTTAATGATGGCTTTGTCACATTGGGAAGAAAATTCAGCAATGATCAAGAACTTTTGTTCATTAGTTCATCAAGAATCGGAAAAACAGGTTCAGTGATCTCTCTTGGGGTTCAAGCAACAAAAGTAACTGATTTTTTTGCTAGTGTTATTGCTCATCATCAACAAGGTGCCATGTTGTATATGGCTACAGAAGATGGGCAAGTGCTTCTAGAAGGGATCAAGAACACCCACATGGTTGTTTCTGATAATGACAAGGTTTCTTTCCAATATGTAAATAATCATACTAGTTATTATCAGGGTTCTGTTACATGCAAAGATGATGGTGGAGTTGTTGCTTCTATTTTGAAGATTCAAGATGTTAAGTATTTAATGCACTGCTCCTCAATTCAGATAATGGGGATCAAATTGGTGTATGTTGTAGCAGTGCCACAAAATGGAGCAATGATCAGTTTTATAAAGAAATTTAAGAAGTATGGGTTGATGGTACTGAGTGCAATGGTGATTATGTCCATAATTGGCATAATTAGCATGGTAATTATGAAAAGGGCAGTAATGAAGCAAAAAGAAGCAACAGAAGAGGCTGAGAGGAAGAGCAAGAATAAGAGCATTGCTTTTGCGACAGCATGCCATGATGTTCGTGCTTCCCTCGCAACCCTCACTGGTTTGATAGACTTGTCATCTTCACAGCTTGTCCCTTCTTCATCAGAACTAAACTCCTATCTCAAGCAAATGGATTCTTGTACCAAAGATTTACTAGGAATGTTGAATAGCATATTGGATGCAAGCAAGATTGAAGCAGGGGAAATGCAACTTGAGGAAGAAGAATTTGATGTGTTCCAATTCCTAGAAGAGGTAGTTGATTCCTACCATAATGTGGCTATGAAGAAAGGAGTAGATATTGTATTGGACCCTTTCAATGACTCGGTTCACAGATATTCACACACAAAAGGTGACAGAGTTAAACTCAAGAGAGTCTTATGCAACTTATTAGACAATGCTGTTAAATTCACTGATGAAGGACACATAGCAGTTAGGGTAAAGGCACAGAAACCTACCTTACAGAACTCAATGTCAATGATGAGTGTTTCTAACCAAAATAGATATTGGTCATGCTTATTCATCAATAGAGAAAACAATGAACCACATGATGATGATGACATAGAAGCCAATAATTCAACTCAACAAGATCATAGTAATACTATGGATTTCATATTTGAAGTTGATGATACTGGAAAAGGAATTCCCAAAGACAAGCATGAGTCTGTGTTTGAGAATTATGTCCAAGTCAAAGAAACTGCTATTGACCATGGTGGAACTGGCTTGGGACTTGGCAGTGTGAGGTCCTTGGTTCGATTGATGCATGGAGATATTAGAATTGTGGACAAGGATAGTGGTGCAAAAGGAACATGTTTCAGGTTCAATGTGCACCTCACTACTGTATGTGAGATGAGAACAGATGATATCACAAGAGAAAGTGAATCTAAACCAGTTGACAGAAATCAATCACACGGCTTAACCATTCACCATACTAGTTCTGGTTCAAGCATGTGTTCCTTGAGTCCCAAGCTACCTATCTGTGGCCCTAGTACTTCTCGACGTGAGGGATCTCGAGTTGTTCTCTTGATTCAAGGCGATGAGCGCCGAAGAGCAACACAAAGGTTCGTGGAGAGAAAAGGGATCAGAGTTAAGGTTTTGAAGGAGTGGAGAGATCTGTTTCATACCCTCAATAAGATAAAAAAGAAGGGTCTGAAAAGCTCAAGTTCAGGTTCTAGTTCTAGTTCTGCTATACCTAGTTTTGCTAATGCCCCTTTGAGTGCTTCCATGGATGAAACTGAATCTACCCGAGCCTTCGTCCTGATTGTGATTGATGCAAAAGCAGGACCATTTCAAGAACTATGCAGGTTGGTATCTGAATTCAAGAGAGGCCTTTGTATTTCTTGTAGAGTTGTTTGGTTAGAGAATCCAATTTCTCCTAGTGTTGATTTCAAAAGCCTAAATGAGGATGATTATGACCCAAATGACATTGTTCTTCACAAACCATTACATGGTAGCTCTTTGTTCCAAGTTTTAAGTCTTCTTCCTGAGTATGGTGGTGGATCAATGAGAGCAAGTGGGTCAATACTAGCTTCCCCAAGTGCAATTCAAAGAGTTGAACTAGAAAAGTGTGGCACTTCAAGGTCAAGGAATGGGAAGGAACCACAACAATGCTTTGGAGATCAATCTCATGATAGTTCCAAAGCAAGAACATCATCTCCAGTTCATCAAGGAGGAACAAAAGAGAGTGAAGACCCAAGAAGCAGTAACAAGCCCTTGAGTGGTAAGAGAATCATGGTTGTTGAAGACGATAAAGCGGCTCGCATGGTGGCTTCTACTTTTTTGGAACAGCTTGGAGCTTCTGTTGAGAAATGTGAGAATGGTAAGCAAGCTGTGGAGCTAGTTAAAGAGGGTCTAAGCAGAGATTTTCCAAATCCTCCATATGATTACATCTTAATGGACTGCCAGATGCCAGAAATAAATGGATATGAGGCAACAAGGCAAATAAGAGAGATAGAGAAGGAATATGATATTCACATTCCTATAATTGCATTAACTGCTAATACTGAGGAAGAGGCAAAAATGAGATCAGAATCTGGAAAGGACCACCGTCCATTGACATTAGAAGCTGGAATGGACCACCACCTAGTCAAACCCATTAAAAAAGACAAGTTACTTGAAGCCATCACAAAAGTACACGCTAGAGTTAGGACTAGAGACTGA 3438 0.3956 MERATPMKTKNYRSRPVYLSASLLCCKLYVLMSSPLMRQCVVSMRRCSSIVASCYLFLVKKGAYLILSLSLMPCSYVLFTLLEHHVNLNSQKVLFQFHSEITALETLIQPMNSSSNHLARFLNSAFHATNISSFSDIKTKVAPLLYETFETVPQLAQISYIGMEGYFFSIYNDEDGQPLAIYSNCSTSSIISKHYYVQPVNRDSGKLYGNATIFEPYINATWVGEALLNDGFVTLGRKFSNDQELLFISSSRIGKTGSVISLGVQATKVTDFFASVIAHHQQGAMLYMATEDGQVLLEGIKNTHMVVSDNDKVSFQYVNNHTSYYQGSVTCKDDGGVVASILKIQDVKYLMHCSSIQIMGIKLVYVVAVPQNGAMISFIKKFKKYGLMVLSAMVIMSIIGIISMVIMKRAVMKQKEATEEAERKSKNKSIAFATACHDVRASLATLTGLIDLSSSQLVPSSSELNSYLKQMDSCTKDLLGMLNSILDASKIEAGEMQLEEEEFDVFQFLEEVVDSYHNVAMKKGVDIVLDPFNDSVHRYSHTKGDRVKLKRVLCNLLDNAVKFTDEGHIAVRVKAQKPTLQNSMSMMSVSNQNRYWSCLFINRENNEPHDDDDIEANNSTQQDHSNTMDFIFEVDDTGKGIPKDKHESVFENYVQVKETAIDHGGTGLGLGSVRSLVRLMHGDIRIVDKDSGAKGTCFRFNVHLTTVCEMRTDDITRESESKPVDRNQSHGLTIHHTSSGSSMCSLSPKLPICGPSTSRREGSRVVLLIQGDERRRATQRFVERKGIRVKVLKEWRDLFHTLNKIKKKGLKSSSSGSSSSSAIPSFANAPLSASMDETESTRAFVLIVIDAKAGPFQELCRLVSEFKRGLCISCRVVWLENPISPSVDFKSLNEDDYDPNDIVLHKPLHGSSLFQVLSLLPEYGGGSMRASGSILASPSAIQRVELEKCGTSRSRNGKEPQQCFGDQSHDSSKARTSSPVHQGGTKESEDPRSSNKPLSGKRIMVVEDDKAARMVASTFLEQLGASVEKCENGKQAVELVKEGLSRDFPNPPYDYILMDCQMPEINGYEATRQIREIEKEYDIHIPIIALTANTEEEAKMRSESGKDHRPLTLEAGMDHHLVKPIKKDKLLEAITKVHARVRTRD 1145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181492g00003 1145 SMART HKATPase_4 544 706 IPR003594 -
Stsc181492g00003 1145 ProSiteProfiles Response regulatory domain profile. 1002 1138 IPR001789 GO:0000160
Stsc181492g00003 1145 MobiDBLite consensus disorder prediction 955 984 - -
Stsc181492g00003 1145 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 414 495 IPR036097 GO:0000155|GO:0007165
Stsc181492g00003 1145 MobiDBLite consensus disorder prediction 949 1002 - -
Stsc181492g00003 1145 ProSiteProfiles Histidine kinase domain profile. 434 706 IPR005467 -
Stsc181492g00003 1145 PRINTS Bacterial sensor protein C-terminal signature 630 644 IPR004358 GO:0016310|GO:0016772
Stsc181492g00003 1145 PRINTS Bacterial sensor protein C-terminal signature 664 682 IPR004358 GO:0016310|GO:0016772
Stsc181492g00003 1145 PRINTS Bacterial sensor protein C-terminal signature 648 658 IPR004358 GO:0016310|GO:0016772
Stsc181492g00003 1145 PANTHER TWO-COMPONENT HISTIDINE KINASE 86 1136 - -
Stsc181492g00003 1145 SMART HisKA_10 427 494 IPR003661 GO:0000155|GO:0007165
Stsc181492g00003 1145 SMART REC_2 1001 1134 IPR001789 GO:0000160
Stsc181492g00003 1145 SUPERFAMILY CheY-like 997 1138 IPR011006 -
Stsc181492g00003 1145 MobiDBLite consensus disorder prediction 985 1002 - -
Stsc181492g00003 1145 Gene3D - 980 1144 - -
Stsc181492g00003 1145 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 483 701 IPR036890 -
Stsc181492g00003 1145 Gene3D - 496 708 IPR036890 -
Stsc181492g00003 1145 CDD REC_hyHK_CKI1_RcsC-like 1003 1134 - -
Stsc181492g00003 1145 Pfam Response regulator receiver domain 1003 1134 IPR001789 GO:0000160
Stsc181492g00003 1145 Gene3D - 410 495 - -
Stsc181492g00003 1145 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 544 705 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181492g00003 Stsc-Chr181492 12479 17292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181492g00003 112 1140 Histidine Kinase Gene Family AT2G47430 37.592 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181492g00003 HATPase_c 1.8e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181492g00003 - - aip:107646610 1650.18