Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181492g00001 ATGGAAGAGGTTGTGATCATAATCGATGACTCTAAATTACTATCTGCGGTTGTTCCTCGCTGTAGAATATGTCACGAAGAAGAGTTTGAGAGCTCAACAACCTTGGAAGCACCATGTGCTTGTTCTGGAACTGTTAAGTTCGCTCACAGAGATTGCATACAGAGATGGTGCAACGAGAAAGGAAATACCATATGTGAACTATGTCTTCAGCAATATCAAGCTGGATACACAGCACATCCTAAGAAGTCTCACATAAATAATGAAGTGGAGGAAGAATCAGATGGAAGAATGGAGATAATGGATGAAGTGGAAGGGGGTGATGAGTATGAGCAGCCAGAATGCAGTGCAGCAGCTCAAAGAAGCGCGTCTTGCTGTCGAACATTTGCATTAGCTTTTACATTTGTGTTGCTTGTAAGACAATTATTCGCTGTGCTTTCAAGTGGAACAGAGGATTATCCATTTACACTTCTAACAGTTATTATACTAAAGGCTTGCGGCATAATTTTACCCATGTACATAATTATTAGGACGATTGGAGTCATTCACAACAGTGTTCAGCGACACTACGTAGATTATGAGTATGCAGTTTCATTGTCTGATACAAGTGACGAAAGCGAGTCAAGACGTCTTGATGCATATGCAACAAGTATATAA 654 0.4037 MEEVVIIIDDSKLLSAVVPRCRICHEEEFESSTTLEAPCACSGTVKFAHRDCIQRWCNEKGNTICELCLQQYQAGYTAHPKKSHINNEVEEESDGRMEIMDEVEGGDEYEQPECSAAAQRSASCCRTFALAFTFVLLVRQLFAVLSSGTEDYPFTLLTVIILKACGIILPMYIIIRTIGVIHNSVQRHYVDYEYAVSLSDTSDESESRRLDAYATSI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181492g00001 217 ProSiteProfiles Zinc finger RING-CH-type profile. 13 75 IPR011016 GO:0008270
Stsc181492g00001 217 Pfam Protein of unknown function (DUF3675) 89 178 IPR022143 -
Stsc181492g00001 217 Pfam RING-variant domain 21 68 IPR011016 GO:0008270
Stsc181492g00001 217 SUPERFAMILY RING/U-box 19 73 - -
Stsc181492g00001 217 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 19 188 IPR033275 -
Stsc181492g00001 217 SMART ringv_2 20 69 IPR011016 GO:0008270
Stsc181492g00001 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 80 IPR013083 -
Stsc181492g00001 217 CDD RING_CH-C4HC3_MARCH 21 68 - -
Stsc181492g00001 217 FunFam E3 ubiquitin-protein ligase MARCH4 9 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181492g00001 Stsc-Chr181492 1296 3565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181492g00001 21 68 C3H Transcription Factor Family AT5G05830 40.385 9.36e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181492g00001 - - gmx:100802379 269.24