Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181491g00009 ATGGAGGGTTCTCCTGGGATTGAAGATAGTGGCAAGTCTGAGGCGCATTTGACTTCAGCTGCTGCTTTTGTTGAGGGTGGAATTCAGGATGCTTGTGACGATGCTTGCAGTATCTGTCTTGAAGACTTCTGTGACAGTGATCCTTCCACGGTGACAACTTGCAAGCATGAGTTTCATTTTCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCCATGTGTTGGCAACCCATCAGTCTCAAAGATCCATCCAGCCAGGAACTTCTTGAGGCTGTGGAAAGAGAGAGGAACTTCAGGTTAAATCCACCTAGAAACGCCACAATATTTCATCATCCAACTCTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCAAATGATGCTGATCTTGAGGAGCATATAATCCAACACTTGGCTGCTGCTGCGGCAATGGGTCGAGCACGTCACATTGCAAGAAGGGAAGGGCAGAGAAACAGGTCATCAGCTCAAGGTCGCCCTCATTTTTTGGTATGGTCGACCCATCCCAATTCACCTCCTGTCGTTCCTGCTTCTTCCTCTCCTACTCACAGCCAGAGGGGGGATGGCGAACCAACACCTGCAGTTGCTTTTGCCACTCTTTCTCCAGCTCCTGCAACTGGAGAAGAATCACCACAGCTTACTTTAGTGCCTCCCCCTGTTCTAGCTGAACAGGTTTCTGCTTCAGGATCTGGGCCTGCTATACTCACAACTGATCATCAGGGATCATCTAACAATAGGAGATCTCCTAGCCAGTCTTCTCCAAGTAGTCAAGACAGAGCGGGGCCATCAGAATTACAGTCCTTTTCAGAATCTCTGAAATCTAAATTAAATGCTGTGTCGTCAAGATACAAGGAGTCGATTTCCAAGAGCACTAGAGGGTGGAAGGAGAGATGGTTCTCTCGTAATACCTCTATGTCTGATATTGGAACTGAAGTTCGACGAGAAGTTAATGCTGGGATTGCAACTGTGTCACGAATGATGGAACGCCTGGAAACCAGAGACAGTAACCGAAGCAATAGCAATACTGCACCAAGTAATTTGGAGGATGGTTCGGTTCAGGGTTCAACGGATCAACATTTAACAGAAACCGGAGCGAGTCAACCTAGAGATACCAACACAGAAACATCTTGTGCTGCAGGTTCTAGCTCTAGTTAA 1182 0.4721 MEGSPGIEDSGKSEAHLTSAAAFVEGGIQDACDDACSICLEDFCDSDPSTVTTCKHEFHFQCILEWCQRSSQCPMCWQPISLKDPSSQELLEAVERERNFRLNPPRNATIFHHPTLGDFELQHLPVGANDADLEEHIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVWSTHPNSPPVVPASSSPTHSQRGDGEPTPAVAFATLSPAPATGEESPQLTLVPPPVLAEQVSASGSGPAILTTDHQGSSNNRRSPSQSSPSSQDRAGPSELQSFSESLKSKLNAVSSRYKESISKSTRGWKERWFSRNTSMSDIGTEVRREVNAGIATVSRMMERLETRDSNRSNSNTAPSNLEDGSVQGSTDQHLTETGASQPRDTNTETSCAAGSSSS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181491g00009 393 MobiDBLite consensus disorder prediction 338 393 - -
Stsc181491g00009 393 MobiDBLite consensus disorder prediction 171 205 - -
Stsc181491g00009 393 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 21 85 - -
Stsc181491g00009 393 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Stsc181491g00009 393 SUPERFAMILY RING/U-box 29 83 - -
Stsc181491g00009 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 85 IPR013083 -
Stsc181491g00009 393 SMART ring_2 36 76 IPR001841 -
Stsc181491g00009 393 MobiDBLite consensus disorder prediction 238 280 - -
Stsc181491g00009 393 Pfam Ring finger domain 35 76 IPR001841 -
Stsc181491g00009 393 MobiDBLite consensus disorder prediction 345 393 - -
Stsc181491g00009 393 MobiDBLite consensus disorder prediction 180 196 - -
Stsc181491g00009 393 MobiDBLite consensus disorder prediction 233 280 - -
Stsc181491g00009 393 FunFam E3 ubiquitin-protein ligase RHF2A 7 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181491g00009 Stsc-Chr181491 47344 51123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181491g00009 33 84 C3H Transcription Factor Family AT4G00335 44.231 2.47e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181491g00009 K19043 - gmx:100814908 618.616