Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181489g00002 AGATTATGTTGCAAGAGCCCTCTCTTCATAGATTGGCCTATCGTTGGCATGTTACCAAAAGTGTTGTGGAACTTGCATAGGATCCATGATTTTGCAACCGACATTCTTAAGCAACAAGGGAGAACCGGTGAATTCATGGGACCTTGGTTCACCAAAATGAACTATTTGATCACTAGTGACCCCATGAATGTGCATCACATAATGAGCAAGAGTTTTGACAACTATGTCAAGGGCCCCGAATTTCGTGAGATTTTCCAGGTCTTTGGACTTGGAATTTTCACGTCGGATTCGGAGCCCTGGAAATACCACAGATCCTTACTTCTCTCATTGTTCAAGAACAAAAGGTTCGAGATGTTTCTAGAGAAGACAATCCAGAAGAAGGTAAAAGGTAGCTTGATTCCAACGTTGGAACACGTGAAACAACATGGGATTGAGGTTGATCTACAAGATGTATTCAATAGGTTCACATTTGATAACATATGTTCTATAGTTTTAGGGTATGATCCTAATTGTCTTTCTATTGAGTTCCCTCATGTTGCATGTGAGAAGGCTTTTAATGAAGCTGAAGAGTCCATATTCTATAGGCATGTGGTTCCAAAGAGTGTTTGGAAGCTTCTAGAATGGCTTCAAATAGGTGAAGAAAGAAAAATGAAAGAAGCTTGTAAGGTGTTTGACCAATTCATATATTCATGCATAGCATCAAAGAGAGAAGAGCTAATAAGCAAGTATAACAACAAAAGTAGTCAAATAGATGAATCTGAAGTTGACTTGCTAAGTACTTTGATGATGATGAGAGAAGAAGAATCTAAAAAGGGCCAAAGTCAAACCCTAGTTCATGATGACAAGTTTCTAAGAGACGCAGCTTTCAATCTTTTTGTAGCCGGAAGAGATACCATAACTTCAGCTCTTACTTGGTTCTTTTGGCTTATTGCTAAAAACCCATTAGTTGAATCCAAGATTCTTGAAGAGATCAAGGAAAATTTCGGAGCAAATAATGATTATGACATGAAACACAATGTCTTAAGCATTGAAGAGGTGAAAAAGCTAGTTTATCTTCATGGTGCTCTTTGTGAATCTTTGAGGCTTTTTCCTCCTATTCCTTTTGAGAGCAAGCAAGCAATCAATTATGACAAACTCCCTAGTGGACATGATGTTAGTCCAAATACAACTATTTTACTCTCTTTGTATTCAATGGGAAGATTTGAAGAGATATGGGGAAAAGATTGCTTGGAGTTCAAGCCAGAAAGATGGATATCTGAAAAAGGAGGAATAATTCATGTGCCTTCTTACAAGTTTATTAGTTTTAATGCCGGACCAAGAACTTGTTTGGGAAAAGACTTGTCTTTTATGCAAATGAAGATGGTGGTAGCTGCTATTTTGTCCAACTATTGTATACAAGTAGTGGAGGGTCATGAAGCTATACCAAGCCTTTCAATTGTTCTTCTAATGAAGGGTGGTTTGAAGGTTAGGATAACTAAAAGAGAAGTGTAA 1491 0.3769 RLCCKSPLFIDWPIVGMLPKVLWNLHRIHDFATDILKQQGRTGEFMGPWFTKMNYLITSDPMNVHHIMSKSFDNYVKGPEFREIFQVFGLGIFTSDSEPWKYHRSLLLSLFKNKRFEMFLEKTIQKKVKGSLIPTLEHVKQHGIEVDLQDVFNRFTFDNICSIVLGYDPNCLSIEFPHVACEKAFNEAEESIFYRHVVPKSVWKLLEWLQIGEERKMKEACKVFDQFIYSCIASKREELISKYNNKSSQIDESEVDLLSTLMMMREEESKKGQSQTLVHDDKFLRDAAFNLFVAGRDTITSALTWFFWLIAKNPLVESKILEEIKENFGANNDYDMKHNVLSIEEVKKLVYLHGALCESLRLFPPIPFESKQAINYDKLPSGHDVSPNTTILLSLYSMGRFEEIWGKDCLEFKPERWISEKGGIIHVPSYKFISFNAGPRTCLGKDLSFMQMKMVVAAILSNYCIQVVEGHEAIPSLSIVLLMKGGLKVRITKREV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181489g00002 496 Gene3D Cytochrome P450 5 495 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS E-class P450 group I signature 303 329 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS E-class P450 group I signature 283 300 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 CDD CYP86A 44 487 - -
Stsc181489g00002 496 PANTHER CYTOCHROME P450 11 489 - -
Stsc181489g00002 496 SUPERFAMILY Cytochrome P450 11 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS P450 superfamily signature 442 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 Pfam Cytochrome P450 12 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc181489g00002 496 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181489g00002 Stsc-Chr181489 10237 11728 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181489g00002 11 494 Cytochrome P450 AT2G23180 48.866 7.92e-165 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181489g00002 - - gmx:100779590 697.197