Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181485g00004 ATGGAACAAAGCATTCCAATAAAACACACTAGGCATCGTAGTGTCACCAACAAGTTCATGAAACAAAAGAAAAATTTTGATCTTGTCCATCTCAATAATGATCCCATTTCCACAAAGCCTAAAGTGATTCGTATATTGCTCACTGATCAAGATGCTACTGACTCTTCCGGTGATGAAGAAGAGGAGTTTTTCCCTCGCCAAAGGGTGAAGCAATACATCAACCAAATTAATATTCACCCACCACCACCATGTGAAACCGTTTCCAATAATTCCCGAAAGAGGCTTGCTGGAATATCATCCCCTTCATCATGCCGGCGACTAGTGAAGGCCACTACTGTAAGTACCAATAATAACAACACTGACAACAAGGGCAGAAAGTACCGCGGTGTAAGACAAAGGCCATGGGGTAAATGGGCTGCCGAGATTCGAGATCCGAATCGACACATCCGAGTTTGGCTGGGAACTTTTGACACTGCTGAAGAAGCTGCAAGAGAGTATGATAATGCTGCGATCAAGTTTCGCGGTCCCAAAGCTCTAACAAACTTCGCAATATCACCAGCATCACCAGAAAGGAATGTAAACTTGAAGTTTGAAAGCTATGGTTCTGTATATGACTCATCATGTGAGGATGAGTGCCTTAACATTTCTTCATCACCTACTTCAGTTCTCCATTCCGCATGTCATAAAATAGGAAATTTACAAAAGCACAACAAAGAAAACGATGGAGAGTGTGAAGGTGAGAGGAGTAGTAGGTATTTTGATGAGACATTGGGAATGGGGAATGAGATGTTTAACTTTGCAACATTGCATGATGAGTGTGTGGCTATGTTTGATGATGAAAGCACCACTACAACACGGGTCTTTGTTAGTGAGAGTTTCAAGTTTGGTGATCACATTGAGCTTGGTAATGCAAGTATGTATCAGGAAGATGTTAGTGCCTTTTTTCTGGGAAGTTTTGATAATACCTTCTCGGAATGTGCTTTTGTTGAAAACGCTCATGGCTTTCCTTCCGAGCGGCTTTATCGGCCTCTTCTCAGAAGGGGTGTCGTTGCTGATTTGCTCGCTTCTAAGGAGATGTTTCCATTTTCCTTTTGCTGA 1098 0.4226 MEQSIPIKHTRHRSVTNKFMKQKKNFDLVHLNNDPISTKPKVIRILLTDQDATDSSGDEEEEFFPRQRVKQYINQINIHPPPPCETVSNNSRKRLAGISSPSSCRRLVKATTVSTNNNNTDNKGRKYRGVRQRPWGKWAAEIRDPNRHIRVWLGTFDTAEEAAREYDNAAIKFRGPKALTNFAISPASPERNVNLKFESYGSVYDSSCEDECLNISSSPTSVLHSACHKIGNLQKHNKENDGECEGERSSRYFDETLGMGNEMFNFATLHDECVAMFDDESTTTTRVFVSESFKFGDHIELGNASMYQEDVSAFFLGSFDNTFSECAFVENAHGFPSERLYRPLLRRGVVADLLASKEMFPFSFC 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181485g00004 365 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Stsc181485g00004 365 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Stsc181485g00004 365 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Stsc181485g00004 365 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Stsc181485g00004 365 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Stsc181485g00004 365 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Stsc181485g00004 365 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 39 234 - -
Stsc181485g00004 365 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Stsc181485g00004 365 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Stsc181485g00004 365 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181485g00004 Stsc-Chr181485 32886 35557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181485g00004 6 261 AP2-EREBP Transcription Factor Family AT4G27950 41.762 2.61e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc181485g00004 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181485g00004 - - adu:107494931 464.922