Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181484g00012 ATGCATGGTTTGGATCCTCCATATGCACATAATGATGTCAAACCAGGCAATGTTCTCATAACACATAGAAAAGGCCAACCTCCACTTGCCATACTTATGGACTTTGGCAGTGCTCGACCTGCGAGGAAGCAAATTCGCTCCCGGTCTGAGGCTTTGCAGTTGCAGGAGTGGGCAGCTGAACATTGCTCTGCCCCTTACCGAGCTCCCGAGCTGTGGGATTGCCCAAGCCAAGCTGATATTGACGAGAGGACTGATATTTGGTCACTTGGATGCACACTGTATGCGATTATGTATGGGGTTTCTCCATTTGAATATGCACTCGGTGAATCAGGTGGGAGCCTGCAACTGGCTGTGGTAAATGCACAGGTGAAATGGCCAGCTGGACCTAAGCCTCCATATCCAGAGGCCCTGCATCAGTTTGTGACTTGGATGCTTCAGCCTCAGGCCACCGTTCGTCCGCAAATAGATGATATCATTATCCATGTTGACAAGTTGATCACAAAGTTCTCATCTTGA 516 0.4903 MHGLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQIRSRSEALQLQEWAAEHCSAPYRAPELWDCPSQADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAVVNAQVKWPAGPKPPYPEALHQFVTWMLQPQATVRPQIDDIIIHVDKLITKFSS 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181484g00012 171 Gene3D Transferase(Phosphotransferase) domain 1 1 170 - -
Stsc181484g00012 171 ProSiteProfiles Protein kinase domain profile. 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181484g00012 171 SMART serkin_6 1 166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181484g00012 171 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 169 - -
Stsc181484g00012 171 ProSitePatterns Serine/Threonine protein kinases active-site signature. 8 20 IPR008271 GO:0004672|GO:0006468
Stsc181484g00012 171 SUPERFAMILY Protein kinase-like (PK-like) 6 161 IPR011009 -
Stsc181484g00012 171 Pfam Protein kinase domain 9 161 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181484g00012 Stsc-Chr181484 49536 51148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181484g00012 10 161 EF-hand Containing Proteins AT1G18890 28.846 1.02e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Stsc181484g00012 Pkinase 5.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181484g00012 K08856 - vvi:100254141 343.969