Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181484g00011 ATGGGTTGCTCCTTCTCTGGTCTGAACGCCTNNNNNNNNNNTTGGATCAACGAGAATCGATTCCGCGTCGTTAGGCAGCTCGGCGAAGGTGGATTCGCCTTCGTTTACTTGGTCAAAGAAGTTCCCGCTGACTCTGCTTCTTCTTCCACTGGCCTCGCTAACAAGCTCAAGAATCCTTCTCTTCTCTCCGATGATGGAACTTATGCGATGAAAAAGGTTCTTATTCAGAATAGTGAGCAATTGGCATTGGTGAAGGAGGAGATCCGTGTTTCTTCTCTTTTCAGTCATCCGAATCTGCTTCCACTTCTTGATCATGCAGTCATTTCAGTGAAGCCTACTCAAGATACATCTTGGACCCATGAAGCATACTTGCTATTTCCTGTTCATTTGGATGGAACATTGTTTGACAATGCTAATACAATGAGAGCCAAGAAGGAGTTCTATTCTACCACAGATGTTCTTCAAATATTTAGGCAGCTTTGTGCGGGACTCAAGCATATGCATGGTTTGGATCCTCCATATGCACATAATGATGTCAAACCAGGCAATGTTCTCATAACACATAGAAAAGGCCAACCTCCACTTGCCATACTTATGGACTTTGGCAGTGCTCGACCTGCGAGGAAGCAAATTCGCTCCCGGTCTGAGGCTTTGCAGTTGCAGGAGTGGGCAGCTGAACATTGCTCTGCCCCTTACCGAGCTCCCGAGCTGTGGGATTGCCCAAGCCAAGCTGATATTGACGAGAGGACTGATATTTGGTCACTTGGATGCACACTGTATGCGATTATGTATGGGGTTTCTCCATTTGAATATGCACTCGGTGAATCAGGTGGGAGCCTGCAACTGGCTGTGGTAAATGCACAGGTGAAATGGCCAGCTGGACCTAAGCCTCCATATCCAGAGGCCCTGCATCAGTTTGTGACTTGGATGCTTCAGCCTCAGGCCACCGTTCGTCCGCAAATAGATGATATCATTATCCATGTTGACAAGTTGATCACAAAGTTCTCATCTTGA 1014 0.4645 MGCSFSGLNAXXXXWINENRFRVVRQLGEGGFAFVYLVKEVPADSASSSTGLANKLKNPSLLSDDGTYAMKKVLIQNSEQLALVKEEIRVSSLFSHPNLLPLLDHAVISVKPTQDTSWTHEAYLLFPVHLDGTLFDNANTMRAKKEFYSTTDVLQIFRQLCAGLKHMHGLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARKQIRSRSEALQLQEWAAEHCSAPYRAPELWDCPSQADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAVVNAQVKWPAGPKPPYPEALHQFVTWMLQPQATVRPQIDDIIIHVDKLITKFSS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181484g00011 337 SUPERFAMILY Protein kinase-like (PK-like) 14 327 IPR011009 -
Stsc181484g00011 337 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 3 335 - -
Stsc181484g00011 337 SMART serkin_6 21 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181484g00011 337 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Stsc181484g00011 337 Pfam Protein kinase domain 64 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181484g00011 337 ProSiteProfiles Protein kinase domain profile. 21 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181484g00011 337 CDD STKc_16 20 333 - -
Stsc181484g00011 337 Gene3D Transferase(Phosphotransferase) domain 1 10 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181484g00011 Stsc-Chr181484 49536 53629 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181484g00011 26 327 EF-hand Containing Proteins AT4G04710 25.566 5.23e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Stsc181484g00011 Pkinase 1.4e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181484g00011 K08856 - egr:104421163 604.364