Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181483g00008 ATGGTTCTTAATGTTGTGATTGGTTTCTTGGTGCTGATTAGTTGTTATGGAACCATTTATGGGACTGATACTGATATCTTCTGCTTGAAGAGTATCAAGGAATCCCTAGAAGACCCTTACAATTATTTGCAATCTTCTTGGAATTTCAATAACAAAACCGAAGGGTTTATATGTAAGTTTAATGGGGTTGAATGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTCAAGCTCTCGAATATGGGGCTAAAGGGTCAGTTTCCCCGGGCCATTCGAAACTGTTCGAGTTTGACAGGGTTGGATCTTTCGGTCAACAAGCTATCCGGATCGATTCCGGCAGATATATCCTCTCTTCTGACTTATGTGACTACTCTTGATCTGTCATCAAATGAATTCTCTGGCAACATACCCGAAAATCTTGCAAATTGTACCTACCTTAATAGCCTTAAACTTGATTCGAATAGGCTTACTGGTCAAATTCCCGGACAATTCGCCAGCCTCGGACGGCTCAAAACATTTAGTGTAGCTAACAATCTTTTGTCTGGGCCGGTTCCAAACTTTAATACTACTCAAGTGACTGCATCATATGGAAATAATCTAGGCCTATGTGGAACAACAAACTTGGGGCTGTGTGTGGCCCCGTCTTCCAAAAGCAACACTGCGGTTATAGCCGGAGCAGCCGTTGGTGGGGTGACTCTTGCGGTGTTAGGATTGGGCATTGCAATGTTCTTCTATGTGCGCCGTTATGGTTACAGGAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAGAAGCATAAAGGGAGCCAAAGCAATAAAGGTTTCTTTGTTTGAGAAATCAGTTTCGAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAACTTCAGTAATACCAATATCATCGGGTCAGGACGAACGGGAACTGTTTACAAAGCTGTTCTTGAGGATGGCACATCACTTATGGTTAAGAGGTTGCAGCAATCCCAGCACTCTGAGAAAGAATTTATGTCCGAGATGGCTACACTCGGGTCGGTCAAACACCGGAACCTGGTTCCTCTCTTAGGATTTTGCATGGCAAAAAAGGAGAGGCTTGTGGTGTATAAATATATGCCAAATGGAAACCTCCATGATCAGCTACATCCTGCCGAAGGTTCCAGCTCCCTTGACTGGACTCTGAGGCTCAAAATTGCAATTGGAGCTGCCAAAGGATTTGCATGGCTTCATCATAGCTGCAATCCCCGAATCATCCACCGGAACATAAGCTCTAAGTGCATATTGTTGGATGCAGATTTCGAGCCCAAAATCTCCGATTTCGGCCTTGCCAGACTGATGAACCCTATAGATACACATTTGAGCACTTTTGTCAATGGTGAGTTTGGAGACTTAGGCTATGTTGCTCCAGAGTACACAAGAACCTTGGTTGCTACACCAAAGGGTGATGTTTATAGCTTCGGCACCGTGCTTCTCGAGCTGGTAACCGGTGAAAGACCTACCCATGTGGCTAAAGCTCCGGAAACATTCAAAGGGAACCTTGTAGAGTGGATTATGCAGCTCTCGAGCAACGCTCAACTCCACGACGCCATCGATGAGTCACTAGCCGGAAAGGGTGTCGATAACGAGCTCTTCCAATTCCTGAAGGTGGCTTGCAACTGTGTTTCTTTAACTGCAAAGGAGAGACCAACCATGTTTGAAGTGTATCAGTTTCTAAGAGCAATTGGGAGTAGGTACAATTTCACTACTGATGATGAGATATTGATACCTGTAGATATTGACACTGCTGATAACATGGAGGAACTTATTGTTGCTAGAGAAGCATTTGATGAATGA 1836 0.4423 MVLNVVIGFLVLISCYGTIYGTDTDIFCLKSIKESLEDPYNYLQSSWNFNNKTEGFICKFNGVECWHPDENRVLNLKLSNMGLKGQFPRAIRNCSSLTGLDLSVNKLSGSIPADISSLLTYVTTLDLSSNEFSGNIPENLANCTYLNSLKLDSNRLTGQIPGQFASLGRLKTFSVANNLLSGPVPNFNTTQVTASYGNNLGLCGTTNLGLCVAPSSKSNTAVIAGAAVGGVTLAVLGLGIAMFFYVRRYGYRRKKEEDPEGNKWARSIKGAKAIKVSLFEKSVSKMKLSDLMKATNNFSNTNIIGSGRTGTVYKAVLEDGTSLMVKRLQQSQHSEKEFMSEMATLGSVKHRNLVPLLGFCMAKKERLVVYKYMPNGNLHDQLHPAEGSSSLDWTLRLKIAIGAAKGFAWLHHSCNPRIIHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWIMQLSSNAQLHDAIDESLAGKGVDNELFQFLKVACNCVSLTAKERPTMFEVYQFLRAIGSRYNFTTDDEILIPVDIDTADNMEELIVAREAFDE 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181483g00008 611 Gene3D Ribonuclease Inhibitor 23 212 IPR032675 -
Stsc181483g00008 611 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 42 187 - -
Stsc181483g00008 611 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 259 372 - -
Stsc181483g00008 611 SUPERFAMILY L domain-like 24 188 - -
Stsc181483g00008 611 FunFam Leucine-rich repeat receptor-like protein kinase 22 186 - -
Stsc181483g00008 611 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 373 586 - -
Stsc181483g00008 611 Gene3D Phosphorylase Kinase; domain 1 259 372 - -
Stsc181483g00008 611 Gene3D Transferase(Phosphotransferase) domain 1 373 590 - -
Stsc181483g00008 611 SUPERFAMILY Protein kinase-like (PK-like) 278 572 IPR011009 -
Stsc181483g00008 611 CDD STKc_IRAK 304 572 - -
Stsc181483g00008 611 Pfam Protein tyrosine and serine/threonine kinase 301 571 IPR001245 GO:0004672|GO:0006468
Stsc181483g00008 611 Pfam Leucine rich repeat N-terminal domain 23 66 IPR013210 -
Stsc181483g00008 611 ProSiteProfiles Protein kinase domain profile. 298 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181483g00008 Stsc-Chr181483 62280 65397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181483g00008 10 598 Receptor kinase-like Gene Family AT3G28450 46.543 0.0 539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc181483g00008 PK_Tyr_Ser-Thr 2.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181483g00008 - - psat:127076602 949.888