Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181478g00007 ATGCCCATGATTCTTCCTATATCTTCATCCTTAAATGAACAGATGGAATCGGATCTTGGCAAACTCTTCATTGGAGGAATATCTTGGGACACCGATGAGGAACGTCTCAAGGAATATTTTGGAAAATATGGGGAGGTTATAGAGGCTGTGATCATGAGAGATCGCACCACTGGTCGTGCTCGTGGTTTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCCGAGAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAACAGTCCATAAATAGACAGTCTGGTAGTGCGAATGCCTCTCCTGGTCCCGGACGCACGAAAAAGATCTTCGTTGGAGGTTTGCCATCAACTATCACAGAAAGCGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAAAGGCCAAGAGGTTTTGGCTTCATCACATTTGATTCAGAAGAAGCCGTGGATCGAGTTCTTTATAAAACTTTTCATGAACTGAATGGAAAGCTGGTTGAAGTCAAGAGAGCAGTTCCGAAAGAGCTATCCCCTGGCCCCAGCCGAAGCCCATTGATAGGTTATAACTATGGTATAAATAGGGCCAGTAGCTATCTAAACAATTATGCTCAGGGTTATAGTATGAGTCCAATGGGAGGATACGGAGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGCGGGTTTACTCCATTCGGCAACAGTGCTTATGGAATGGGAGTGAATTTGGAGCCGGGATTGAGCCCGAGCTACGGAGGAACTTCTAGTTATGGGAGCAATATAGGATACGGTCGAATATTTAGTCCTTTCTACAGTGGAAACTCGAGCAGATACACCACCCCCATAGGCTATAGTGAGGGTAATAGCAGAAGTGACTCTCTTATGAACTCACCTTCTCGGAATGTCTGGGGAAATGGGGTCCTGAACAATTCTAATAACACAATCAGTCCTGGTTCTTTCTTGGGATCTGGAAGTGGGAGCTTCGGTGTCTCGATTGGAAATAGTGGCGCTAATTGGGGTCCATCCCAAGGCGGAGGAGCTGCTTCTGGTTATGCTACAGGGAATAATGTTTATGAAGGTGGAGAATCCGGCTTTGGGTTAGGTGGGGGAGGGTATGGAAGAAACAGCGGTACGGGTATGACTCCATCCTCTGCTTTTGCTGCATCAACTGGTAGCTTTGAAGGATCCTATGGAGATTTATACCGAACGGGCAGTGGTTCAGTTTACAACGACTCTGCTTGGCGGACCACTCCTTCTGAGATAGATGGCTCCGGTTCTTTTGGTTACGGTCTTGGTGGTATAGCTTCAGACGACCCTGTAAAGACTTCTGAGGGTTATATTGGAAGCTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCCTAG 1473 0.4569 MPMILPISSSLNEQMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQQSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKLVEVKRAVPKELSPGPSRSPLIGYNYGINRASSYLNNYAQGYSMSPMGGYGVRMDGRFSPLTSGRSGFTPFGNSAYGMGVNLEPGLSPSYGGTSSYGSNIGYGRIFSPFYSGNSSRYTTPIGYSEGNSRSDSLMNSPSRNVWGNGVLNNSNNTISPGSFLGSGSGSFGVSIGNSGANWGPSQGGGAASGYATGNNVYEGGESGFGLGGGGYGRNSGTGMTPSSAFAASTGSFEGSYGDLYRTGSGSVYNDSAWRTTPSEIDGSGSFGYGLGGIASDDPVKTSEGYIGSYNVTSRQSNRGIAA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181478g00007 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 19 101 - -
Stsc181478g00007 490 Gene3D - 100 208 IPR012677 -
Stsc181478g00007 490 Gene3D - 20 99 IPR012677 -
Stsc181478g00007 490 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 15 486 - -
Stsc181478g00007 490 SUPERFAMILY RNA-binding domain, RBD 5 117 IPR035979 GO:0003676
Stsc181478g00007 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 197 IPR000504 GO:0003723
Stsc181478g00007 490 CDD RRM2_Hrp1p 121 198 - -
Stsc181478g00007 490 SUPERFAMILY RNA-binding domain, RBD 119 207 IPR035979 GO:0003676
Stsc181478g00007 490 SMART rrm1_1 121 193 IPR000504 GO:0003723
Stsc181478g00007 490 SMART rrm1_1 21 92 IPR000504 GO:0003723
Stsc181478g00007 490 CDD RRM1_hnRNPA_hnRNPD_like 22 92 - -
Stsc181478g00007 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 89 IPR000504 GO:0003723
Stsc181478g00007 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 181 IPR000504 GO:0003723
Stsc181478g00007 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 96 IPR000504 GO:0003723
Stsc181478g00007 490 MobiDBLite consensus disorder prediction 92 119 - -
Stsc181478g00007 490 FunFam Heterogeneous nuclear ribonucleoprotein 1 117 204 - -
Stsc181478g00007 490 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181478g00007 Stsc-Chr181478 51490 55928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181478g00007 19 194 Eukaryotic Initiation Factors Gene Family AT2G23350 25.281 2.74e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181478g00007 K14411 - gmx:100805131 806.594