Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181478g00006 ATGATGGAATCGGATCTTGGCAAACTCTTCATTGGAGGAATATCTTGGGACACCGATGAGGAACGTCTCAAGGAATATTTTGGAAAATATGGGGAGGTTATAGAGGCTGTGATCATGAGAGATCGCACCACTGGTCGTGCTCGTGGTTTCGGCTTTGTTGTCTTTGCTGATCCTGCTGTTGCCGAGAGAGTCATTGTGGATAAGCACATAATCGATGGCCGCACGGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAACAGTCCATAAATAGACAGTCTGGTAGTGCGAATGCCTCTCCTGGTCCCGGACGCACGAAAAAGATCTTCGTTGGAGGTTTGCCATCAACTATCACAGAAAGCGATTTCAAGAAGTATTTTGATCAGTTCGGTACAATTACTGATGTTGTAGTGATGTATGATCACAATACTCAAAGGCCAAGAGGTTTTGGCTTCATCACATTTGATTCAGAAGAAGCCGTGGATCGAGTTCTTTATAAAACTTTTCATGAACTGAATGGAAAGCTGGTTGAAGTCAAGAGAGCAGTTCCGAAAGAGCTATCCCCTGGCCCCAGCCGAAGCCCATTGATAGGTTATAACTATGGTATAAATAGGGCCAGTAGCTATCTAAACAATTATGCTCAGGGTTATAGTATGAGTCCAATGGGAGGATACGGAGTCAGGATGGATGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGCGGGTTTACTCCATTCGGCAACAGTGCTTATGGAATGGGAGTGAATTTGGAGCCGGGATTGAGCCCGAGCTACGGAGGAACTTCTAGTTATGGGAGCAATATAGGATACGGTCGAATATTTAGTCCTTTCTACAGTGGAAACTCGAGCAGATACACCACCCCCATAGGCTATAGTGAGGGTAATAGCAGAAGTGACTCTCTTATGAACTCACCTTCTCGGAATGTCTGGGGAAATGGGGTCCTGAACAATTCTAATAACACAATCAGTCCTGGTTCTTTCTTGGGATCTGGAAGTGGGAGCTTCGGTGTCTCGATTGGAAATAGTGGCGCTAATTGGGGTCCATCCCAAGGCGGAGGAGCTGCTTCTGGTTATGCTACAGGGAATAATGTTTATGAAGGTGGAGAATCCGGCTTTGGGTTAGGTGGGGGAGGGTATGGAAGAAACAGCGGTACGGGTATGACTCCATCCTCTGCTTTTGCTGCATCAACTGGTAGCTTTGAAGGATCCTATGGAGATTTATACCGAACGGGCAGTGGTTCAGTTTACAACGACTCTGCTTGGCGGACCACTCCTTCTGAGATAGATGGCTCCGGTTCTTTTGGTTACGGTCTTGGTGGTATAGCTTCAGACGACCCTGTAAAGACTTCTGAGGGTTATATTGGAAGCTACAATGTTACAAGTAGACAATCTAATAGAGGAATTGCTGCCTAG 1434 0.4596 MMESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIVDKHIIDGRTVEAKKAVPRDDQQSINRQSGSANASPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITFDSEEAVDRVLYKTFHELNGKLVEVKRAVPKELSPGPSRSPLIGYNYGINRASSYLNNYAQGYSMSPMGGYGVRMDGRFSPLTSGRSGFTPFGNSAYGMGVNLEPGLSPSYGGTSSYGSNIGYGRIFSPFYSGNSSRYTTPIGYSEGNSRSDSLMNSPSRNVWGNGVLNNSNNTISPGSFLGSGSGSFGVSIGNSGANWGPSQGGGAASGYATGNNVYEGGESGFGLGGGGYGRNSGTGMTPSSAFAASTGSFEGSYGDLYRTGSGSVYNDSAWRTTPSEIDGSGSFGYGLGGIASDDPVKTSEGYIGSYNVTSRQSNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181478g00006 477 Gene3D - 7 86 IPR012677 -
Stsc181478g00006 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Stsc181478g00006 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Stsc181478g00006 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 168 IPR000504 GO:0003723
Stsc181478g00006 477 CDD RRM2_Hrp1p 108 185 - -
Stsc181478g00006 477 CDD RRM1_hnRNPA_hnRNPD_like 9 79 - -
Stsc181478g00006 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 83 IPR000504 GO:0003723
Stsc181478g00006 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 6 88 - -
Stsc181478g00006 477 MobiDBLite consensus disorder prediction 79 106 - -
Stsc181478g00006 477 SUPERFAMILY RNA-binding domain, RBD 106 194 IPR035979 GO:0003676
Stsc181478g00006 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 473 - -
Stsc181478g00006 477 Gene3D - 87 195 IPR012677 -
Stsc181478g00006 477 MobiDBLite consensus disorder prediction 87 101 - -
Stsc181478g00006 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 104 191 - -
Stsc181478g00006 477 SMART rrm1_1 8 79 IPR000504 GO:0003723
Stsc181478g00006 477 SMART rrm1_1 108 180 IPR000504 GO:0003723
Stsc181478g00006 477 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181478g00006 Stsc-Chr181478 51490 55928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181478g00006 6 181 Eukaryotic Initiation Factors Gene Family AT2G23350 25.281 3.82e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181478g00006 K14411 - gmx:100805131 806.594