Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181474g00008 ATGCTGGGTACAGCGGAGGATAAGTTTTTTACTGAGTATGGAGAGGCAAGCCGATACGAGATCCAAGAAGTTGTTGGAAAAGGAAGTTATGGTATTGTGGGTGCTGCCGTCGACACTCGTACTGGGGAGAAGGTTGCAATTAAGAAAATTAATGATGTTTTTGAGCATGTCTCGGATGCGACGCGAATCCTAAGAGAAATAAAGCTACTTCGGTTGCTCCGACATCCTGATATAGTAGAAATTAGGCATATAATGCTTCCTCCTTCTCGAAGAGAGTTCAAGGATGTCTATGTTGTGTTTGAGTTGATGGACTCCGACCTTCATCAAGTCATTAAGGAGAACGATGATCTTTCTCCTGAGCACTACCAGTTTTTCTTGTACCAACTTCTTCGGGGTCTAAAATACATACATTCAGCTAATGTCTTTCATCGTGACTTAAAGCCAAAAAATATTCTTGCTAATGCTGATTGCAAAATTAAGATATGTGATTTTGGGCTTGCTCGAGTATCGTTCAACGAAGCTCCATCAGCCATTTTCTGGACTGATTATGTTGCAACTCGATGGTATCGTGCACCTGAACTATGCGGTTCTTTTTTCTCAAAATATACCCCCGCTATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCACTGGGAGGCCATTGTTTCCTGGGAAAAATGTGGTGCATCAATTGGATCTCATGACCGATTTGCTTGGTACTCCTCCTGCTGAATCCATTTCCAGGATTCGAAACGAGAAGGCTAGAAGGTATCTTAGTAGCATGCGGAAAAAGCAACCAGTTCCCTTCACCAAAAAATTTCCAAATGCAGATGTAACAGCTCTTCGTTTGCTGGAGCGACTACTTGCATTTGATGCTAAAGATCGTCCAACAGCTGAAGAGGCATTAGCTGATCCTTACTTCCATGGTTTAGCTAATGTAGATCGAGAACCATCCACTCAACCCATCTCGAAGCTTGAGTTTGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTCCGAGAGCTGATTTATCGAGAGATTCTAGAGTACCATCCACAGATGCTCCAAGAATATCTTCGTGGTGGAGATCAAACAAGTGGCTTCATGTATCCAAGGTAG 1128 0.4238 MLGTAEDKFFTEYGEASRYEIQEVVGKGSYGIVGAAVDTRTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIRHIMLPPSRREFKDVYVVFELMDSDLHQVIKENDDLSPEHYQFFLYQLLRGLKYIHSANVFHRDLKPKNILANADCKIKICDFGLARVSFNEAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDLMTDLLGTPPAESISRIRNEKARRYLSSMRKKQPVPFTKKFPNADVTALRLLERLLAFDAKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGDQTSGFMYPR 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181474g00008 375 FunFam Mitogen-activated protein kinase 8 113 - -
Stsc181474g00008 375 ProSitePatterns MAP kinase signature. 54 157 IPR003527 GO:0004707|GO:0005524|GO:0006468
Stsc181474g00008 375 Pfam Protein kinase domain 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181474g00008 375 Gene3D Phosphorylase Kinase; domain 1 35 356 - -
Stsc181474g00008 375 SMART serkin_6 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181474g00008 375 CDD STKc_TDY_MAPK 18 355 - -
Stsc181474g00008 375 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 18 363 - -
Stsc181474g00008 375 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Stsc181474g00008 375 FunFam Mitogen-activated protein kinase 105 333 - -
Stsc181474g00008 375 ProSiteProfiles Protein kinase domain profile. 19 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181474g00008 375 FunFam Mitogen-activated protein kinase 334 356 - -
Stsc181474g00008 375 SUPERFAMILY Protein kinase-like (PK-like) 13 315 IPR011009 -
Stsc181474g00008 375 Gene3D Transferase(Phosphotransferase) domain 1 105 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181474g00008 Stsc-Chr181474 57426 60022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181474g00008 3 374 MAP Kinase Gene Family AT1G73670 84.946 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Stsc181474g00008 Pkinase 4.7e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181474g00008 - - fve:101295052 698.353