Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181474g00004 ATGGAGCTTTGTTTAGATTCTGATAGTGAAAAGAAGTTGCGGTACATTGAGTACTTTATGCATCGAGTGAACCTTCTTCGATACTATAAAATAACACCGGTTGTTGTATTTGATGGTGGCAATGTTCCTTGCAAGGCAGCAACTGAGAAAGACAGGCATAGAAAAAGAAGTGCTAATCGTGAATTGGCAATGGCCAAGCTCAATGAAGGAAATGTTGTTGCAGCCTCAGAACTCTTCCAGAGAGCAGTTAACATTACTCCCCTGATGGCGTATCAATTAATTCAGACTCTGAGATCAGAGAGCATTGAATTTGTTGTAGCTCCATATGAAGCGGATGCTCAGTTAGCATACATGTCGAATCTTGAAGTAGAAAAGGGTGGAGTTGCTGCAGTGATCACAGAAGATAGTGATTTGATAGCATATGGTTGTCCAGCTATAATTTTTAAGATGGACCGTGAGGGGAATGGCGAAAGAATTGAGATAGAGAAGGTTTTTTCTTCCAAGTCCACTAGACCTTCGTTTCGGAATTTTGACATGAAACTCTTCACAGGTATGTGTGTCTTAGCTGGCTGTGACTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGGCTTAGTGTCCAAGTATCAGAGTCTAGATCGCGTTTTGACAGTTCTTAAGTTTGAGAAGGGTGATCAAATGCCCGAAGATTATGCAAAATCCTTCAAAGAGGCAATAGCAGTCTTTCAGCATGCTAGGATATATGATCCCAATGCTAAAGAGCTTAAGCACATGAAGCCTCTTCCACAAGGTTTTCTCAAGTCACTTGATGGAACACTCGATTTCTTGGGACCAGAAATTCCATCAACTATAGTCACTGCAATAGCTGAAGGAGACTTAAATCCATTAACTAAGGAAGCCTTTGATAAGTCTGAAAATCCTGGACTTTCTCTTAACCGGGTTGCAGTAAAAAGGATCGGTCAAACAAAGAAAGTTGAGGTTCCAAAACAAGTTACCAAAGAAAACTGCTTCTCAATCTTTGTCTCCCAAAATACCATTGAAAATAATACAGGCAAGTCAATGACAAGAGAAGAGTTTGTATCAGATATAGAAAAACATTCAGGTGAAGAATTGGCACTTGAGAAACTAATCATGCCACTGGAAACAAATGAAGCACTTGAAAAGACCATTATATCTGATAGCACTCCTTTGAAGGTTCCTAACAACAACCCATTTAAGATCATGAAAACTGAGGAAACATCTTTTTCTGTTCAGACAGATGATAAAACCACATTTGAAAAGGTTTCTATTGCAAGCAATGTGGAATACATTGACTTGTGCACACCCCCAGATAGCTTTGAAGAAGAAAAGGAGTCTGAGAATCTCTCAAGGAAAAGGAAATTTCAGAACATTTGTTCAGATGAACCAGTCTCAGGAGTGACTCAAGAAGAACCAGATTCAGATGTTATATGCTTGAATGTGGAATCACAAGGGAGTGTGAATTCTAAGACAAGCAAGAAAAATGGTGCCGAATTAAAAGGAAGATGCGGAAGTGAAAAACAATCCAAGAGAGGCAAGTTCAAGCAGGCATTGCCTGGCAATAGAACTATTTTGAGTTTCTTTTCTAGAGTGTAA 1623 0.3949 MELCLDSDSEKKLRYIEYFMHRVNLLRYYKITPVVVFDGGNVPCKAATEKDRHRKRSANRELAMAKLNEGNVVAASELFQRAVNITPLMAYQLIQTLRSESIEFVVAPYEADAQLAYMSNLEVEKGGVAAVITEDSDLIAYGCPAIIFKMDREGNGERIEIEKVFSSKSTRPSFRNFDMKLFTGMCVLAGCDFLPSVPGIGIARAHGLVSKYQSLDRVLTVLKFEKGDQMPEDYAKSFKEAIAVFQHARIYDPNAKELKHMKPLPQGFLKSLDGTLDFLGPEIPSTIVTAIAEGDLNPLTKEAFDKSENPGLSLNRVAVKRIGQTKKVEVPKQVTKENCFSIFVSQNTIENNTGKSMTREEFVSDIEKHSGEELALEKLIMPLETNEALEKTIISDSTPLKVPNNNPFKIMKTEETSFSVQTDDKTTFEKVSIASNVEYIDLCTPPDSFEEEKESENLSRKRKFQNICSDEPVSGVTQEEPDSDVICLNVESQGSVNSKTSKKNGAELKGRCGSEKQSKRGKFKQALPGNRTILSFFSRV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181474g00004 540 FunFam Exonuclease 1 6 168 - -
Stsc181474g00004 540 SUPERFAMILY PIN domain-like 13 192 IPR029060 -
Stsc181474g00004 540 CDD PIN_EXO1 1 165 IPR044752 GO:0046872
Stsc181474g00004 540 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 97 114 IPR006084 -
Stsc181474g00004 540 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 182 197 IPR006084 -
Stsc181474g00004 540 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 33 52 IPR006084 -
Stsc181474g00004 540 Gene3D - 2 176 - -
Stsc181474g00004 540 CDD H3TH_FEN1-like 182 252 - -
Stsc181474g00004 540 Pfam XPG N-terminal domain 13 57 IPR006085 GO:0004518
Stsc181474g00004 540 Gene3D - 177 248 - -
Stsc181474g00004 540 ProSitePatterns XPG protein signature 2. 101 115 IPR019974 GO:0016788
Stsc181474g00004 540 SMART HhH_4 179 212 IPR008918 GO:0003677|GO:0003824
Stsc181474g00004 540 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 11 463 IPR006084 -
Stsc181474g00004 540 MobiDBLite consensus disorder prediction 495 524 - -
Stsc181474g00004 540 FunFam exonuclease 1 175 248 - -
Stsc181474g00004 540 Pfam XPG I-region 102 192 IPR006086 GO:0004518
Stsc181474g00004 540 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 177 307 IPR036279 -
Stsc181474g00004 540 SMART xpgineu 98 167 IPR006086 GO:0004518
Stsc181474g00004 540 MobiDBLite consensus disorder prediction 504 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181474g00004 Stsc-Chr181474 19290 22973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181474g00004 15 272 Core DNA Replication Machinery Family AT5G26680 25.475 1.57e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181474g00004 K10746 - gmx:100817932 699.123