Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181472g00006 ATGAATATTTCTCGGTGTAGAATATGCCATGAAGAAGAATTCGAGACCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGAACCGTTAAGTTTGCTCATAGAGATTGCATACAGAGATGGTGCAATGAGAAGGGCAATACAACTTGTGAGATTTGTCTCCAGGAATATGAACCAGGATATACAGCACCTCCAAAGAAATCTCAGATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATAGAAACAAGGGAGGTAGAAGAAGCCTTAAACACAAGAAGAAGAAGAAGAAGAAGAATAGAAAACGATTACTCTGATGAATGCACTTCTGCTGCTGATAGAAGAGCTTCTTGCTGCAGATCACTTGCTTTCGCTTTTACACTCATAATGCTTGTAAGACATCTTTTTGCAGTGCTTACAAGTGGAATGGAAGATTACCCATTTACAATTCTTACTGTGTTTATGCTAAGGGCAAGTGGAATTATTGTGCCCATGTACATAATAATTAGGACAATTGGAGGCATACATGGCAGTATTATTCACCGCCACTATCATCATCAGGATTCTGATGACGATGATGACACATCGTCAATATCTGAGGGAGATGAAGATGATGAAGAAAACGAGACAACCCAGGATGATGAAGATTTAGGATATTCATAG 669 0.3991 MNISRCRICHEEEFETSKTLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQEYEPGYTAPPKKSQIADAAMTIRDSLQIETREVEEALNTRRRRRRRIENDYSDECTSAADRRASCCRSLAFAFTLIMLVRHLFAVLTSGMEDYPFTILTVFMLRASGIIVPMYIIIRTIGGIHGSIIHRHYHHQDSDDDDDTSSISEGDEDDEENETTQDDEDLGYS 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181472g00006 222 MobiDBLite consensus disorder prediction 195 222 - -
Stsc181472g00006 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 63 IPR013083 -
Stsc181472g00006 222 ProSiteProfiles Zinc finger RING-CH-type profile. 1 60 IPR011016 GO:0008270
Stsc181472g00006 222 FunFam E3 ubiquitin-protein ligase MARCH4 1 63 - -
Stsc181472g00006 222 CDD RING_CH-C4HC3_MARCH 6 53 - -
Stsc181472g00006 222 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 4 183 IPR033275 -
Stsc181472g00006 222 SMART ringv_2 5 54 IPR011016 GO:0008270
Stsc181472g00006 222 ProSiteProfiles Zinc finger RING-type profile. 6 53 IPR001841 -
Stsc181472g00006 222 MobiDBLite consensus disorder prediction 187 222 - -
Stsc181472g00006 222 Pfam RING-variant domain 6 53 IPR011016 GO:0008270
Stsc181472g00006 222 SUPERFAMILY RING/U-box 4 58 - -
Stsc181472g00006 222 Pfam Protein of unknown function (DUF3675) 59 174 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181472g00006 Stsc-Chr181472 29596 32751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181472g00006 6 53 C3H Transcription Factor Family AT2G37950 42.857 1.81e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181472g00006 - - gmx:100797029 275.018