Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181472g00002 ATGGCCACAGATGCCAAAGCACCGCCACCAGCAGCGAAATTTCAGAACCCAGAGTTTCGGGACTTAACGGCGCCGTTAGCCTCCCAAGACGGCCTCCGTTTCTGGCAGCTAATGGTCGCCGGCTCCGTTGCCGGCTCCGTCGAACACATGGCCATGTTCCCCGTCGACACCGTCAAGACTCACATGCAAGCCCTAGGCGCCTGCCCGCTCAAACGAAACGTCACCGTTTCGCAAGCCCTAAGAACCATCGTCACCTCGAACGGCGGGCCTATCGCTCTCTACCGCGGCATAGGCGCAATGGGCCTGGGAGCAGGCCCGGCCCATGCCGTATACTTCTCCTTCTACGAGACCTGCAAGACCTTCTTCTCGCGCGGGAACCCTAACAATTCGCTGGCGCACGCTGTTTCCGGTGTGTGCGCCACTGTTGTGAGCGATGCAGTGTTCACGCCGATGGACATGGTGAAGCAGAGGCTTCAGCTGAGTGGTGCGAACGGTTATGGTGGTGTTTGGGACTGTGTGAAGAGGGTGATGAGTGAGGAAGGGTTTGGTGCTTTCTATGCTTCGTATAGGACCACTGTGTTGATGAATGCGCCTTTTACCGCCGTCCATTTCGTTACTTATGAGGCTGCCAAACGCGGCCTTATTGAGGTGGCGACCCCGGAGAGCGCCGACGATGAACGGCTCGTTGTTCATGCGACTGCTGGTGCCGTTGCCGGTGCTTTGGCCGCGGCAGTTACTACGCCACTTGATGTGGTTAAAACTCAGTTACAGTGTCAGGGTGTCTGTGGATGCGATAGGTTTGAAAATGGTTCAATTGGGGATGTTTTAAAAACAATAGTGAAAAAGGATGGATACAGAGGGCTAATGCGAGGATGGATTCCAAGAATGCTGTTCCATGCTCCTGCAGCCGCAATCTGCTGGTCAACATATGAGGCCGGGAAGTCTTTTTTCCAAGAATTAAATCAGAGTAAAGAAAGCAGCACTATCATATGA 993 0.5438 MATDAKAPPPAAKFQNPEFRDLTAPLASQDGLRFWQLMVAGSVAGSVEHMAMFPVDTVKTHMQALGACPLKRNVTVSQALRTIVTSNGGPIALYRGIGAMGLGAGPAHAVYFSFYETCKTFFSRGNPNNSLAHAVSGVCATVVSDAVFTPMDMVKQRLQLSGANGYGGVWDCVKRVMSEEGFGAFYASYRTTVLMNAPFTAVHFVTYEAAKRGLIEVATPESADDERLVVHATAGAVAGALAAAVTTPLDVVKTQLQCQGVCGCDRFENGSIGDVLKTIVKKDGYRGLMRGWIPRMLFHAPAAAICWSTYEAGKSFFQELNQSKESSTII 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181472g00002 330 Gene3D Mitochondrial carrier domain 14 217 IPR023395 -
Stsc181472g00002 330 Gene3D Mitochondrial carrier domain 218 329 IPR023395 -
Stsc181472g00002 330 FunFam Mitochondrial RNA-splicing protein MRS3 164 328 - -
Stsc181472g00002 330 SUPERFAMILY Mitochondrial carrier 31 311 IPR023395 -
Stsc181472g00002 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 128 213 IPR018108 -
Stsc181472g00002 330 Pfam Mitochondrial carrier protein 227 319 IPR018108 -
Stsc181472g00002 330 Pfam Mitochondrial carrier protein 129 215 IPR018108 -
Stsc181472g00002 330 Pfam Mitochondrial carrier protein 32 124 IPR018108 -
Stsc181472g00002 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 226 316 IPR018108 -
Stsc181472g00002 330 PRINTS Mitochondrial carrier protein signature 235 257 IPR002067 GO:0055085
Stsc181472g00002 330 PRINTS Mitochondrial carrier protein signature 37 50 IPR002067 GO:0055085
Stsc181472g00002 330 PRINTS Mitochondrial carrier protein signature 50 64 IPR002067 GO:0055085
Stsc181472g00002 330 PRINTS Mitochondrial carrier protein signature 186 204 IPR002067 GO:0055085
Stsc181472g00002 330 PRINTS Mitochondrial carrier protein signature 143 161 IPR002067 GO:0055085
Stsc181472g00002 330 PRINTS Mitochondrial carrier protein signature 96 116 IPR002067 GO:0055085
Stsc181472g00002 330 PANTHER MITOFERRIN-1-RELATED 31 319 - -
Stsc181472g00002 330 ProSiteProfiles Solute carrier (Solcar) repeat profile. 32 121 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181472g00002 Stsc-Chr181472 13433 17322 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181472g00002 135 326 Chloroplast and Mitochondria Gene Families AT1G07030 26.289 1.01e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181472g00002 K15113 - gmx:100802640 501.13