Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181470g00006 GACAAAAATGGACAAAGCAATGGGGAGGTCCATAAAGATGGTATTTCGCAAAGACTTGAGGAAATATACAAGAGGCTTGAGTTAATTGATGCTTATGCTGCAGAGGCACGTGCAGCATCAATACTTGCGGGTCTTAGTTTCTCCCCTGAGATGCAGAAGAAGGCGACAAAAACCTTTTCTGGAGGATGGCGGATGCGCATAGCTCTAGCTCGTGCACTATTTATAGAGCCTGATATATTACTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCATACTTGGTTAAATGGCCAAAAACATTTATCGTCGTTTCTCATGCCAGGGAGTTTTTAAATACGGTAAAATATCGAGAACAAATTAAAAACCAGCAAAAAGCACTAGAGGCAAATGAACGTGCAAGATCTCATATGCAGACCTTCATTGACAAGTTCCGCTATAATGCCAAGAGAGCATCCCTTGTTCAATCCAGAATCAAGGCTTTGGAACGAATGGGCCATGTGGATGAAATTATTAACGACCCTGATTACAAATTTGAGTTCCCAACCCCAGATGATAGACCGGGCCCACCCATTATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGACCTATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATTGGAAAGTCAACTATACTCAAATTAATTGCTGGGGAACTAAATCCTATATCGGGGACAGTTTTCCGATCTGCTAAGGTTCGTATAGCGGTGTTCAGTCAGCATCATGTTGATGGACTAGACTTATCTTCAAATCCTCTTCTGTACATGATGCGCTGTTATCCAGGCGTTCCAGAGCAGAAGCTTCGAGCTCATCTAGGGTCTTTTGGTGTAACAGGAAATCTTGCACTTCAGCCAATGTATACTTTGTCAGGGGGTCAGAAAAGCAGGGTTGCATTTGCTAAGATAACTTTCAAGAAGCCACATATAATATTGCTTGATGAGCCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGACTTGTGATGTTCCAAGGAGGCATTCTCATGGTGAGTCATGATGAGCACCTCATATCCGGAAGCGTGGAGGAGCTATGGGTTGTATCCGAAGGAAGAGTGTCGCCATTCCACGGCAACTTCCAAGATTATAAGAAGATACTCCAATCTTAG 1227 0.4262 DKNGQSNGEVHKDGISQRLEEIYKRLELIDAYAAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVKYREQIKNQQKALEANERARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELNPISGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSEGRVSPFHGNFQDYKKILQS 408
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181470g00006 408 ProSitePatterns ABC transporters family signature. 318 332 IPR017871 GO:0005524|GO:0016887
Stsc181470g00006 408 Pfam ABC transporter 17 87 IPR003439 GO:0005524
Stsc181470g00006 408 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 123 407 - -
Stsc181470g00006 408 CDD ABCF_EF-3 199 391 - -
Stsc181470g00006 408 Gene3D - 161 408 IPR027417 -
Stsc181470g00006 408 Gene3D - 10 150 IPR027417 -
Stsc181470g00006 408 Pfam ABC transporter 216 346 IPR003439 GO:0005524
Stsc181470g00006 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 119 IPR027417 -
Stsc181470g00006 408 Pfam ABC transporter 123 182 IPR032781 -
Stsc181470g00006 408 FunFam ATP-binding cassette sub-family F member 3 161 408 - -
Stsc181470g00006 408 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 199 408 IPR003439 GO:0005524
Stsc181470g00006 408 SMART AAA_5 224 391 IPR003593 GO:0016887
Stsc181470g00006 408 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 400 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181470g00006 Stsc-Chr181470 60903 69794 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181470g00006 155 393 Calmodulin-binding Proteins AT2G36910 25.180 1.49e-10 61.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181470g00006 K06158 - rcu:8271609 751.51