Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc181470g00006 | GACAAAAATGGACAAAGCAATGGGGAGGTCCATAAAGATGGTATTTCGCAAAGACTTGAGGAAATATACAAGAGGCTTGAGTTAATTGATGCTTATGCTGCAGAGGCACGTGCAGCATCAATACTTGCGGGTCTTAGTTTCTCCCCTGAGATGCAGAAGAAGGCGACAAAAACCTTTTCTGGAGGATGGCGGATGCGCATAGCTCTAGCTCGTGCACTATTTATAGAGCCTGATATATTACTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCATACTTGGTTAAATGGCCAAAAACATTTATCGTCGTTTCTCATGCCAGGGAGTTTTTAAATACGGTAAAATATCGAGAACAAATTAAAAACCAGCAAAAAGCACTAGAGGCAAATGAACGTGCAAGATCTCATATGCAGACCTTCATTGACAAGTTCCGCTATAATGCCAAGAGAGCATCCCTTGTTCAATCCAGAATCAAGGCTTTGGAACGAATGGGCCATGTGGATGAAATTATTAACGACCCTGATTACAAATTTGAGTTCCCAACCCCAGATGATAGACCGGGCCCACCCATTATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGACCTATTCTATTTAAGAATTTGAATTTTGGGATTGATCTTGACAGCCGTATTGCAATGGTTGGACCAAATGGTATTGGAAAGTCAACTATACTCAAATTAATTGCTGGGGAACTAAATCCTATATCGGGGACAGTTTTCCGATCTGCTAAGGTTCGTATAGCGGTGTTCAGTCAGCATCATGTTGATGGACTAGACTTATCTTCAAATCCTCTTCTGTACATGATGCGCTGTTATCCAGGCGTTCCAGAGCAGAAGCTTCGAGCTCATCTAGGGTCTTTTGGTGTAACAGGAAATCTTGCACTTCAGCCAATGTATACTTTGTCAGGGGGTCAGAAAAGCAGGGTTGCATTTGCTAAGATAACTTTCAAGAAGCCACATATAATATTGCTTGATGAGCCATCCAATCATCTGGACTTGGATGCTGTTGAGGCGCTAATTCAAGGACTTGTGATGTTCCAAGGAGGCATTCTCATGGTGAGTCATGATGAGCACCTCATATCCGGAAGCGTGGAGGAGCTATGGGTTGTATCCGAAGGAAGAGTGTCGCCATTCCACGGCAACTTCCAAGATTATAAGAAGATACTCCAATCTTAG | 1227 | 0.4262 | DKNGQSNGEVHKDGISQRLEEIYKRLELIDAYAAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVKYREQIKNQQKALEANERARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIINDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELNPISGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVMFQGGILMVSHDEHLISGSVEELWVVSEGRVSPFHGNFQDYKKILQS | 408 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc181470g00006 | 408 | ProSitePatterns | ABC transporters family signature. | 318 | 332 | IPR017871 | GO:0005524|GO:0016887 | |
Stsc181470g00006 | 408 | Pfam | ABC transporter | 17 | 87 | IPR003439 | GO:0005524 | |
Stsc181470g00006 | 408 | PANTHER | ATP-BINDING TRANSPORT PROTEIN-RELATED | 123 | 407 | - | - | |
Stsc181470g00006 | 408 | CDD | ABCF_EF-3 | 199 | 391 | - | - | |
Stsc181470g00006 | 408 | Gene3D | - | 161 | 408 | IPR027417 | - | |
Stsc181470g00006 | 408 | Gene3D | - | 10 | 150 | IPR027417 | - | |
Stsc181470g00006 | 408 | Pfam | ABC transporter | 216 | 346 | IPR003439 | GO:0005524 | |
Stsc181470g00006 | 408 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 20 | 119 | IPR027417 | - | |
Stsc181470g00006 | 408 | Pfam | ABC transporter | 123 | 182 | IPR032781 | - | |
Stsc181470g00006 | 408 | FunFam | ATP-binding cassette sub-family F member 3 | 161 | 408 | - | - | |
Stsc181470g00006 | 408 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 199 | 408 | IPR003439 | GO:0005524 | |
Stsc181470g00006 | 408 | SMART | AAA_5 | 224 | 391 | IPR003593 | GO:0016887 | |
Stsc181470g00006 | 408 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 181 | 400 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc181470g00006 | Stsc-Chr181470 | 60903 | 69794 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc181470g00006 | 155 | 393 | Calmodulin-binding Proteins | AT2G36910 | 25.180 | 1.49e-10 | 61.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc181470g00006 | K06158 | - | rcu:8271609 | 751.51 |