Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181468g00001 ATGAGAGCGGGTGCGAGTTGGCGTGAGGTTCTCGTGAGGGGGAAACACTGTGAGGATTCCGGCTTTGCCGGCAGGAGACATAAGGGGGGAATGTGGGATGGGGAACATCTGGTGTTAGGAGGGAAATGCGATTTGGGTATGAGGGGGTTCCACACTGTATTTGTGGATAATCTACCATTTGGGATCAGGAAGGGAGAGTTGTATCAACTATTCTGGGCGGATGGGTTTGTCAAGGATGTGTATGTTTCCAACAAACACAGAAGCAAAGTAACATGCCCATTTGCATTTGTGAGATTTGAGGATGCAGGTGATGCTAGAAGAGCAATCGACAGGTTGAATGGAGGTTTATGGAAAGGAAGAAAAATTGTGGTTTCCATGTTGAAGTATAGGCATAGATATGGAAGGGATGTGAAGGGTCATGCTGATGAATCAGCGAGAAGGAAGGGCGTTGAGAACGATGGATACAACAATAATGGTAATACAAGAATAATACAAGAACAAGAAAGACATGGGTGGAGGTGCAGAGGGCCAAGCCTGCTGTGGTATTGCCTGCCAATCGAGATGAGGGGAAAACAAAGCATAAGAAGAGGGAGATTATTGCCAAAGGTTGTGAAACCTAGAAAGAGAGGCTAA 633 0.4613 MRAGASWREVLVRGKHCEDSGFAGRRHKGGMWDGEHLVLGGKCDLGMRGFHTVFVDNLPFGIRKGELYQLFWADGFVKDVYVSNKHRSKVTCPFAFVRFEDAGDARRAIDRLNGGLWKGRKIVVSMLKYRHRYGRDVKGHADESARRKGVENDGYNNNGNTRIIQEQERHGWRCRGPSLLWYCLPIEMRGKQSIRRGRLLPKVVKPRKRG 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181468g00001 210 MobiDBLite consensus disorder prediction 140 160 - -
Stsc181468g00001 210 CDD RRM_SF 53 125 - -
Stsc181468g00001 210 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 129 IPR000504 GO:0003723
Stsc181468g00001 210 SMART rrm1_1 52 125 IPR000504 GO:0003723
Stsc181468g00001 210 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 52 158 - -
Stsc181468g00001 210 SUPERFAMILY RNA-binding domain, RBD 48 142 IPR035979 GO:0003676
Stsc181468g00001 210 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 122 IPR000504 GO:0003723
Stsc181468g00001 210 Gene3D - 47 167 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181468g00001 Stsc-Chr181468 12854 13512 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181468g00001 51 114 Eukaryotic Initiation Factors Gene Family AT3G11400 40.625 1.65e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181468g00001 K12891 - ahf:112794598 73.559