Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181466g00003 ATGTCTGTGCTACTATTATTTGCTGGGATTGTTCTGTTGCTTCTATTTCACGTTTGGATTTCCAGAAGAGCCTCAAGAAGAGACGGAAGAGGATCAATGGCGACTCGAAGAATGTCAATCAATGACTTGGAGAAGCTTCCATGCTATGATTACATTGCCAAGGACATGACAAGTAGCCCTGTGGATTGTGCAGTTTGCTTGGAGAGCCTCAACACCGGCGACAAGTGCCGGTTGTTACCGATGTGCAAGCACAGTTTTCATGCTCAGTGTGTGGATACATGGCTTCTCAAGACACCCTTTTGCCCAATCTGCAGATCAAGTGCTGCTTCTATCAGTGGAAGAAAATTTATTGTTGTAAGAGAAAGCCAAGAAAGTGGTTCTTCTACAAATGTGGGAATGGAAATGAGAGAAAATCCTGCATTAGGATCAACAAGGCAACAAATAGATACAACTGAAAATCATATGGTATCTGTTTCTACTTTGTCTCTGGCTAATGCTGTATAA 504 0.4226 MSVLLLFAGIVLLLLFHVWISRRASRRDGRGSMATRRMSINDLEKLPCYDYIAKDMTSSPVDCAVCLESLNTGDKCRLLPMCKHSFHAQCVDTWLLKTPFCPICRSSAASISGRKFIVVRESQESGSSTNVGMEMRENPALGSTRQQIDTTENHMVSVSTLSLANAV 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181466g00003 167 ProSiteProfiles Zinc finger RING-type profile. 63 105 IPR001841 -
Stsc181466g00003 167 FunFam RING-H2 finger protein ATL2K 38 111 - -
Stsc181466g00003 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 140 - -
Stsc181466g00003 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 112 IPR013083 -
Stsc181466g00003 167 SMART ring_2 63 104 IPR001841 -
Stsc181466g00003 167 Pfam Ring finger domain 62 105 IPR001841 -
Stsc181466g00003 167 SUPERFAMILY RING/U-box 52 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181466g00003 Stsc-Chr181466 18627 19140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181466g00003 26 107 C3H Transcription Factor Family AT1G74410 40.244 1.41e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181466g00003 - K15692 lang:109353575 199.904