Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181465g00001 ATGGATAAAAAACCGTGCAACTCATCTCAAGACCCTGAAGTGAGAAAGGGACCTTGGACAGTAGAAGAAGATTTGATCTTGATCAACTATATTGCAAATCATGGGGAAGGTGTTTGGAACTCCTTAGCCAAAGCTGCTGGTCTTAAACGAACCGGAAAGAGTTGTAGACTCAGATGGCTAAACTACCTTCGCCCTGATGTTAGAAGAGGAAATATCACTCCCGAAGAACAACTTTTGATCATGGAGCTTCATGCAAAGTGGGGAAACAGGTGA 273 0.4322 MDKKPCNSSQDPEVRKGPWTVEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181465g00001 90 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Stsc181465g00001 90 SMART sant 15 65 IPR001005 -
Stsc181465g00001 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Stsc181465g00001 90 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 90 IPR044676 GO:0003700|GO:0006355|GO:0043565
Stsc181465g00001 90 CDD SANT 18 63 IPR001005 -
Stsc181465g00001 90 Gene3D - 16 68 - -
Stsc181465g00001 90 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc181465g00001 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 90 IPR017930 -
Stsc181465g00001 90 FunFam Myb transcription factor 16 68 - -
Stsc181465g00001 90 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181465g00001 Stsc-Chr181465 7542 7962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181465g00001 4 90 MYB Transcription Factor Family AT3G01530 77.778 1.52e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc181465g00001 Myb_DNA-binding 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181465g00001 K09422 - zju:107415291 189.889