Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181464g00012 ATGATGAATGATATCGCCCTCAAGTCTTCTTCTCCTTCTACTCTCGTCGCTCGCTTTAACGCCATACTCCGACAACGCCACTGCAACGCCAGGGCTTTCTCCACCCAAGAAATCGTTCGGACTTATGCCCTATTGCTCTCGGAACTCACCTCCAATGTCAAGCCCCTCATTACCGATCTCACTATCATTGCGGGCCAGCAAAGGGAACACGCCAACGGCATCGCCGACGCTATTTGCAACCGGATTCTAGAGGTGCCTGCTGATCAAAAACTTCCTTCTCTCTTTCTTCTGGACAGTATTGTGAAGAATTTTGGACAGGAATATGTTAAACATTTCTCTTTACGTCTATCTCAAGTTTACTGCGAGACATACAGACAGGTTCAGCCCAATTTGCATTCTGTTATGCAAAGTCTCTTTGGTACCTGGTCAAACATCTTCCCTTCCTCTGTCCTAAGTAATATTGAAGCTCAATTGCAATCTTCACCTTCAGTTAATAATCAGCAATCCTTTGTTAATCACCTCGGGACATATGATTTTGGTGGACTTATTCCTGGGGCTCATGTTAAAACACAATCCTTGCAGCAGATGGAACACTATAGTTCAATTATGGATAATGTTGGTGGTGATAGGTTGGGCTCAACGAAAACTGTAGGCAATACAAGAGAAGAAGGGTTGAATGAATGGCAGCAAAAGAGGTTTTCTGGTGAAGGTTGGAACATATTTCAAACTTCTATGACATATAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAAGCCGTGAAATTCCCAGCAGTAAGATTTTGTTGGTTGAGCAGACTGGTGGAAATGGTTTAGGGAACAAGTTTCCATTAGCATCATGGCAGGACACTGAAGAACAGGAGTTTGATTGGGAAGATGTGAATCCAGGATTAGCAGACTGTAGTGGAAACAGAAGTTCTATGCAATCAAGTGTTAGGTTCTCAAGGAAAAGGAAGATATCTAATCATCTATCTAGTATGGGGGCTCCTCTCCCTGCTGTCAATGCTCATGCTGCTCGTCCTTCCGGCTTGAATCCAGAATTTCCATTGCAAAAACGTCCTAGGAGTCAGTTTGAAGCAATAAATGGTAATAATAACACCAATATGGGTCATGGTCCAAATAGAAGTCTGTTTATACATGACCAGTTGGCTACAAATCAACCTGGACTGATTTTCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTGCAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGGAGATCTTTACAAGGACATGGTGCCTCAATAAGTACACCTATGTCAAATTCATTACCTGTTATGCAATTCCCATTGCAAAGCCAAAGTAGTACAAATTTCTCTTTACATTTACATGGGGGAACCTTGCCACCTTTAATTCAAAGCTGCCCCACTGTTCCATCACAAATGATGCCTCATCCCCCGGCCAATGCTACAATGACAAGTGAACAACCACTTGCATATCTTAATTTGATTAGTTCACTTCTGAACTACGGTGTGATCTCGGTAACTAATCCACTCACTGGACTGGATTCGATTGGGACGGAGTTGGATCCAGATATTTTGAAGGTTCGTCATGAATGTGCAATCAGTGGCTTATATGGTGATCTTCCTAGACAATGCACAAGTTGTGGTGTGAGATTCAAGGGGCAAAATGAGCACAGCAGTCATATGGATTGGCATGTGACTGGGAACCGAATGTGTAAAAGCCGTAGTAAGCAGAAGGGCTTTCAAAAGTGGTTTGTAAGTGGGAGCATGTGGCTAAGTGGTGCAGAATCCACTCCAGGTCCAAGGTTCTTGCCTACTAATGATGATAAGATAGAGGAAATAAAAGAAGATGATCAAGAACTGTGCGTTCCTGCTGAAGAGGATCAGAGTAGATGTGCATTATGTGGAGAGGCTTTCGATGAGTTTTACAGCGATGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAATGCAGCACACATGGGAACAAAATTCATGTCCATGGACAGACATCACTTAGGCCCCATTGTTCATTCCAAATGCACATCTCACTCAACCAACATGGAGCCTACCAAGAATGTAGTAAGAGAAAAGGAATGCGGGTCGACCAAAGATCAGTTTTGTGCACCGTTAATTAGGACTTTCTAA 2211 0.4283 MMNDIALKSSSPSTLVARFNAILRQRHCNARAFSTQEIVRTYALLLSELTSNVKPLITDLTIIAGQQREHANGIADAICNRILEVPADQKLPSLFLLDSIVKNFGQEYVKHFSLRLSQVYCETYRQVQPNLHSVMQSLFGTWSNIFPSSVLSNIEAQLQSSPSVNNQQSFVNHLGTYDFGGLIPGAHVKTQSLQQMEHYSSIMDNVGGDRLGSTKTVGNTREEGLNEWQQKRFSGEGWNIFQTSMTYNLNDEQQRQSPRALIEAYGCDKSREIPSSKILLVEQTGGNGLGNKFPLASWQDTEEQEFDWEDVNPGLADCSGNRSSMQSSVRFSRKRKISNHLSSMGAPLPAVNAHAARPSGLNPEFPLQKRPRSQFEAINGNNNTNMGHGPNRSLFIHDQLATNQPGLIFSNLQNHGQAPQLQFLPPQVPSSTQISHGRSLQGHGASISTPMSNSLPVMQFPLQSQSSTNFSLHLHGGTLPPLIQSCPTVPSQMMPHPPANATMTSEQPLAYLNLISSLLNYGVISVTNPLTGLDSIGTELDPDILKVRHECAISGLYGDLPRQCTSCGVRFKGQNEHSSHMDWHVTGNRMCKSRSKQKGFQKWFVSGSMWLSGAESTPGPRFLPTNDDKIEEIKEDDQELCVPAEEDQSRCALCGEAFDEFYSDEMDEWMYRGATYLNAAHMGTKFMSMDRHHLGPIVHSKCTSHSTNMEPTKNVVREKECGSTKDQFCAPLIRTF 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181464g00012 736 SMART 558neu5 37 159 IPR006569 -
Stsc181464g00012 736 ProSiteProfiles CID domain profile. 34 162 IPR006569 -
Stsc181464g00012 736 FunFam polyadenylation and cleavage factor homolog 4 31 159 - -
Stsc181464g00012 736 SUPERFAMILY ENTH/VHS domain 35 160 IPR008942 -
Stsc181464g00012 736 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 37 712 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc181464g00012 736 MobiDBLite consensus disorder prediction 427 447 - -
Stsc181464g00012 736 Pfam CID domain 53 152 IPR006569 -
Stsc181464g00012 736 ProSitePatterns Zinc finger C2H2 type domain signature. 564 584 IPR013087 -
Stsc181464g00012 736 Gene3D - 28 160 IPR008942 -
Stsc181464g00012 736 CDD CID_Pcf11 39 160 IPR047415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181464g00012 Stsc-Chr181464 63916 67715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181464g00012 475 719 C2H2 Transcription Factor Family AT4G04885 48.819 3.36e-66 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181464g00012 K14400 - aip:107640327 488.419