Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181464g00005 ATGGCGGAGCTGCAGAAACAACAGCCTTCCTCAAAGGAAGCTCACAACACGAAGGCTCTCGTCGGCGCACTCAACATCCTCTCCCGCAACCTCCCTCTCCCTCCCGATCTCTTCAACACCGTTTCTTCCATCTCTCTCAACTCCTCCACTGAGGATGGTTTGTTGGCGGATCTCGATGATGCGCTGTCGAAGCAACGATCCAACTGTGCTTCAGGTTTCAAATTGTGCAGAGCTAGGGAAAGCCGTTACCAAAGCTTCAGCCAGCATCGCTTAACTCAGCTTGAAGGATTGCCTTCTAGCAGGGGAGGAGATGACCTTCAGACAAGATCCCTACTTGAGTATTACGGGTTAAAGCTAGCAGAGTTGCAGAGGATGGTTCGGTCTGATGTTAGCTCTGAGTACTGGCTCAATATTATGTGTGCATATCCTGAGAGGCAGTTGTTTGATTGGGGTGTGATGCGATTGCATCGTCCAATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATAAATTAAGAAAGAAACGTGATGCTGAGAGGATATCAAGATTAGAAGAGCAGGCAAAAAATCATATAGAGACAAGAAAAAGAAGATTTTTCACAGAAATAGTGAATACTGTACGTGAGTTCCAATTGCAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTACAGGCATGGCATGGAAGGCAAAGGCAACGTGCGACACGTGCAGAGAAATTGAGATTCCAAGCCTTAAAAGCTGATGATCAAGAAGCTTACATGAGAATGGTGAAAGAGAGTAAAAATGAAAGATTGACTCTGCTTCTTGAAGAAACAAATAAACTACTTGTAAATTTGGGGGCAGCTGTTCAACGTCAAAGGGACTCAAAACAATCAGATGGTATTGAACCCTTGGAAGATTCAGAAGCAGATTTACCAGAGTCAGATACTTCAAAAAGTGGGATTTCTAAGGAATCACCACTTGAGGAAGATGCAGATTTGATAGATTCTGATCAAAATGGCGAGTCTAGTGATTTACTTGAAGGGCAGCGGCAATACAATTCTGCCATACATTCAATTCAAGAAAAGGTGACAGAGCAACCATCTATACTTCAAGGTGGAGAATTAAGGCCATACCAGCTAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGACTTGGGAAAACAATACAAACCATTTCACTGATAGCATATCTTATGGAGCACAAGGGTGTGACTGGTCCTCACTTGATTGTGGCCCCAAAGGCTGTTCTGCCAAATTGGATGAATGAATTCTCAACATGGGCTCCTAGGTACGTCCAGTGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACTCTAGCTACCACATCCAACGTAGACTTCTGTTGACTGGTACCCCAATTCAAAACAGTTTGCAGGAATTATGGTCCCTGCTAAATTTTCTTCTTCCAAGCATTTTCAATTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAATTATTGGTCATTCGGCGTCTACATCAAGTAATAAGGCCCTTTATATTAAGAAGGAAAAAGGATGAGGTGGAAAAGTATCTTCCTGGGAAATCTCAGGTCATACTCAAATGTGACATGTCAGCTTGGCAGAAAGTATATTATCAACAAGTAACAGATGTAGGAAGAGTTGGCTTAGACAACGGTTCTGGAAAATCAAGAAGTCTACAGAACTTGACAATGCAACTCAGAAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAGACTACCATATGTACAACCGGAAGGAGGAAGTTGTCAGAGCATCCGGGAAGTTTGAACTTCTTGATCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTACTATTTTCACAGATGACTCGTCTCATGGACATTCTTGAAATTTATCTGCGACTTCATGATTTTAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGTTCTCTATTACGGAAATTCAACGCTCCTGACTCTCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTCGGTTTGAACTTACAATCAGCAGATACTGTTATAATATTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAAAAGGAAGTCAGGGTATTTGTGTTAGTTAGTGTGGGATCGATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCCAAAGTCATCCAAGCAGGACTTTTCAACACAACTTCAACAGCTCAGGACAGAAGAGAAATGTTACAGGAGATTATGCGTAGAGGCACAAGCTCACTTGGGACAGATGTACCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCCGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAGAGGAGACAAAGGGAGGATTATAGATCTCGTCTCATGGAAGAGCATGAAGTTCCAGACTGGGTATATTCTGCTCTAAATAAGGATGATCAGGTTAAAGCTTTTGATGCCCTTAGTGTTACCGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGACACCTTAAGTGATCTACAGTGGATGAGGGCCATGGAGAATGGACAAGATGTATCTAAGCTTTCAGCTAAAGGGAAGAGAAGAGGCCTCCTCCCTTCTGACAAACACGCACAAACCAGCAATAAAACGGTGGCCGGTGAAAGGTTGTTAGAGCAAAGGAGTAGAAGTGTCCCCGAGATGAAGATTGAAAGTTCAAGTGCAGATGATTTCATTTTGAGCCCTTCATCTAAGAGGCTGAAAACTGAAGAACCGAGTTCCCAGAAACATGGAAGTGAGAGTGGTTTCGACGAGCATACGTTTTCCTGGAATATTCAGAGGAAGAAGAGAACAAGCTATCCTGGCCAGGGTTCATCATCTGATACTAGAGACCAGAATGCCAATGACAGCAAATAG 3072 0.432 MAELQKQQPSSKEAHNTKALVGALNILSRNLPLPPDLFNTVSSISLNSSTEDGLLADLDDALSKQRSNCASGFKLCRARESRYQSFSQHRLTQLEGLPSSRGGDDLQTRSLLEYYGLKLAELQRMVRSDVSSEYWLNIMCAYPERQLFDWGVMRLHRPMYGVGDPFAMDADDKLRKKRDAERISRLEEQAKNHIETRKRRFFTEIVNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSDGIEPLEDSEADLPESDTSKSGISKESPLEEDADLIDSDQNGESSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVTGPHLIVAPKAVLPNWMNEFSTWAPRYVQWHRLKNHECALARTLDSSYHIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLVIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSRSLQNLTMQLRKCCNHPYLFVGDYHMYNRKEEVVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQSADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLQEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQREDYRSRLMEEHEVPDWVYSALNKDDQVKAFDALSVTGKRKRKEVVYADTLSDLQWMRAMENGQDVSKLSAKGKRRGLLPSDKHAQTSNKTVAGERLLEQRSRSVPEMKIESSSADDFILSPSSKRLKTEEPSSQKHGSESGFDEHTFSWNIQRKKRTSYPGQGSSSDTRDQNANDSK 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181464g00005 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 549 IPR027417 -
Stsc181464g00005 1023 Pfam Helicase conserved C-terminal domain 635 748 IPR001650 -
Stsc181464g00005 1023 Pfam SNF2-related domain 455 615 IPR000330 GO:0005524|GO:0140658
Stsc181464g00005 1023 MobiDBLite consensus disorder prediction 293 348 - -
Stsc181464g00005 1023 MobiDBLite consensus disorder prediction 974 988 - -
Stsc181464g00005 1023 MobiDBLite consensus disorder prediction 989 1017 - -
Stsc181464g00005 1023 CDD SF2_C_SNF 625 759 - -
Stsc181464g00005 1023 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 638 805 IPR001650 -
Stsc181464g00005 1023 SMART ultradead3 372 513 IPR014001 -
Stsc181464g00005 1023 Pfam SNF2-related domain 379 448 IPR000330 GO:0005524|GO:0140658
Stsc181464g00005 1023 PANTHER SNF2/RAD54 HELICASE FAMILY 455 934 - -
Stsc181464g00005 1023 Gene3D - 454 548 IPR038718 -
Stsc181464g00005 1023 Gene3D - 344 453 IPR038718 -
Stsc181464g00005 1023 FunFam Probable ATP-dependent DNA helicase CHR12 555 854 - -
Stsc181464g00005 1023 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 502 IPR014001 -
Stsc181464g00005 1023 Coils Coil 176 196 - -
Stsc181464g00005 1023 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 551 805 IPR027417 -
Stsc181464g00005 1023 Gene3D - 555 854 IPR027417 -
Stsc181464g00005 1023 SMART SnAC_2 841 902 IPR029295 GO:0042393
Stsc181464g00005 1023 SMART helicmild6 664 748 IPR001650 -
Stsc181464g00005 1023 MobiDBLite consensus disorder prediction 911 1023 - -
Stsc181464g00005 1023 Pfam Snf2-ATP coupling, chromatin remodelling complex 842 902 IPR029295 GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181464g00005 Stsc-Chr181464 19096 24341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181464g00005 633 776 RAD5 or RAD16-like Gene Family AT5G22750 38.356 4.29e-24 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc181464g00005 SNF2_N 7.6e-33 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181464g00005 - - gmx:100775993 1625.14