Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181460g00012 ATGGAGAGGGAGGAGCTGAATTTGAACAGAGAGAGTAATAACAACGGTGTTGGAGGTAATACCAGTAAGGGTGGTGGTGATGGCTTCATTGACAGAAGCAAAGTTAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCCGAGGAGGTTTTTACTCTTCTAATTCGATGCTCTTATCAAGTTGTTTGTGTAAAGTCAGCAAGGCAAGTAATCGACGCACTGAATGCAGAGCGACAATATATTGACATCATACTAGCTGAAGTCGACCTTCCAATAAAGAAGGGCATGAAGATGCTGAAGTACATAGCACGTGATAAAGAATTGCGTCGAATTCCTGTTATAATGATGTCTGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAAACTTGGAGCAGCAGACTATCTAGTTAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGGAGGAGACGCATGCTTGGACTTGTAGAGAACAACATCTTGAATTATGAGTTCGACCTGGTAGCATCCGATCCAAGCGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGATACAGATGATGAGTCCAAAAGAAGCACTAATCCAGAGGCAGGAATATCAACCCCACAAGAGGCTGCTGTTGCCATGGATATTGTTGTTGTTGAGGAGCATCCTAATTCTTCCGTGTCGCCTGATGTTCCTGGAATCAGTGATCGCCGAACAGGTGCTCAGGGGCTGCATCAATCATGCAACAATATTACTGATGGTTATTTTTCTTCTGCTCCAAAGAAGAGCGAACTGAGGATAGGAGAATCCTCAGCCTTCTTCACTTATGTCAAAGCAACAACAACAATGAGGAGCAACATTGAAGAGATTGTTCATATTGAAAAGAATGCTACCAAACAAGTGAGAATGGAAGATATGGATCAAGCATGTGCTCAAGAGAGGGGTAACCTTCAAAGACATGAGAATGAGAATGGAGAGACACTTGAAAGCCATTCACAAGAGGACCTACCCAGCAGCAATAGTATACCTGATTCTTTTTCTATTGAGAGGTCTTGCACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCATTACAAGGAAGAGCATCGTCAGGGAGTGGGGCAACCAAGAAATGGAAGTCATGGTTCGGAGCCTGATGCATCTGGCATGAATGCTCACCATGCTTATCCATATTATATGTCAGGGGTTGTTAATCATGTTATGATGCCATCGTCAGCACAACTGTATCAAAAGAATATTCAGGAGCTACAGAATCATACTAGTTCCTCTATGATTGTACAATACAATAATCTTCCTCACTGTCCCCCTCATGCAAATGGAATGACATCCTTTCCATATTATTCAATGGGTATATGCTTACAGCCTGGTCAGATTCCCGCGAATCATTCATGGCCACAATTAGGAGGTTCAAGTTCATCAGAAGTGAAATTAAGCAAAGTTGATAGAAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAACGTTGCTTTGATAAGAAAATTAGGTATGTCAATCGGAAACGACTGGCTGAAAGGCGGCCCCGTGTTAGGGGACAGTTCGTCAGAAAGTTGAATGGTGTCAATGTTGATCTCAATGGACAGCCTGCCTCCACTGATTATGACGACGAAGATGATGAGGAGGATGAAGAAGACAACCATGTAGGAAATGATTCCTCTCCTGAGGATTCATGA 1734 0.4245 MEREELNLNRESNNNGVGGNTSKGGGDGFIDRSKVRILLCDNDSKSSEEVFTLLIRCSYQVVCVKSARQVIDALNAERQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLKLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYEFDLVASDPSDANTNSTTLFSDDTDDESKRSTNPEAGISTPQEAAVAMDIVVVEEHPNSSVSPDVPGISDRRTGAQGLHQSCNNITDGYFSSAPKKSELRIGESSAFFTYVKATTTMRSNIEEIVHIEKNATKQVRMEDMDQACAQERGNLQRHENENGETLESHSQEDLPSSNSIPDSFSIERSCTPPASMEVSQQKHYKEEHRQGVGQPRNGSHGSEPDASGMNAHHAYPYYMSGVVNHVMMPSSAQLYQKNIQELQNHTSSSMIVQYNNLPHCPPHANGMTSFPYYSMGICLQPGQIPANHSWPQLGGSSSSEVKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGVNVDLNGQPASTDYDDEDDEEDEEDNHVGNDSSPEDS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181460g00012 577 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 272 IPR045279 GO:0009736
Stsc181460g00012 577 SMART REC_2 35 150 IPR001789 GO:0000160
Stsc181460g00012 577 MobiDBLite consensus disorder prediction 551 569 - -
Stsc181460g00012 577 MobiDBLite consensus disorder prediction 320 334 - -
Stsc181460g00012 577 Coils Coil 307 327 - -
Stsc181460g00012 577 ProSiteProfiles Response regulatory domain profile. 36 154 IPR001789 GO:0000160
Stsc181460g00012 577 Pfam CCT motif 495 537 IPR010402 GO:0005515
Stsc181460g00012 577 MobiDBLite consensus disorder prediction 183 211 - -
Stsc181460g00012 577 ProSiteProfiles CCT domain profile. 495 537 IPR010402 GO:0005515
Stsc181460g00012 577 MobiDBLite consensus disorder prediction 541 577 - -
Stsc181460g00012 577 Gene3D - 35 226 - -
Stsc181460g00012 577 MobiDBLite consensus disorder prediction 1 25 - -
Stsc181460g00012 577 MobiDBLite consensus disorder prediction 320 394 - -
Stsc181460g00012 577 Pfam Response regulator receiver domain 37 148 IPR001789 GO:0000160
Stsc181460g00012 577 SUPERFAMILY CheY-like 33 161 IPR011006 -
Stsc181460g00012 577 MobiDBLite consensus disorder prediction 335 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181460g00012 Stsc-Chr181460 66337 70851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181460g00012 25 576 Response Regulator Gene Family AT5G61380 51.994 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc181460g00012 Response_reg 3.9e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181460g00012 K12127 - gmx:100786522 850.506