Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181460g00011 ATGTCTCCCCCCCTCGCCGATCACGGTAACACCGATCCACAGGATGATGATGATGATGATGATGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGTAGAAGTAGAAGTAGAAGAGGAGGTAGAAGAAGAAGAAGAGGAAGAAGACGAGGAGGAAGAAGAGGTAGAGGTAGAGGTAGAGGAGGGAGAAGAAGAGGAAGAGGAAGAGGAGGAGGTTGAGGAGGTAGAGGAAGAAGAAGAGGAGGTTGAGGCAGAAGAAGAGGAGCCACAGGAGGTAGAGGAAAAAGAAGAGGAGCCACGGGAGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGCCGACGGTGATGATAGCCACGCCTCAGATTCTGTATCGGATGCCGACAACAATCGCATAGATTCAAGCCAACAAATGGAATCTGAGGTGCAAGAGGGGAACTCGAGGCCAGCTTCTACCATGGAAGAAAACCCCGTAGTAAAGTCTTCTCCAAGTATGCTTTCCAATGAAGAGAATCATGCCATTCTCAAAGCATCGATTCCTTCATCTGAGGCATTAAGTTTAAAAAAGGAAGAGGCTAATGCAACATGTGAAATTCCAAGTCATCCCAAATCAGTAAATGACTTTGCTGCTGCTGCAGATGGCAAAAGCAAAGTTTTAGACTCCAAAGAAGAGAATTGTGCCATTCTCAAAGCATGTGTTGATTCTACTCCTTCATCTGATGCACTTACCTTGAAAAAGGAGCAAGTTTGGCCAACTAACAAAATTTCAAATTCTAGCCATCCCAAAGCAGTTAAAGATTTGGCCTCTGCGGATGATGGCAAAAGTCATGTTTTAGATGTTCATGCTGCAAATGCTGGACTCCATCAACTAACTAACATTGTTGGAGGATGCAATGAACTGAGTTACAATAGCAAAGCTGATTTAGGTGGTGTTAAGGATATGGATTCTGGGGCCACCAATTCATCTAGTAACCCTGGAAAAGACACCCCTATTGGCCTCCCTAAAAGGGATGGCTCTGTTGGAGGTGCCAATGGCAGTCAGAATTCCTTGAAAAGAATTGTGCCATTGGAAGTGGAATCAAAGGATGATGTGAAACAAATCAAATCAAGCGGGACTATAAGTCTCTCTCCCAATGCCGAGATGAAGGACGGAAACAAACGCCAAAGAATTATATGTGCCTTTTTTGCCAAAGGGTGGTGCATCAGAGGCAATTATTGTAGCTTTCTTCATATAAAAGATTCTGCAAATAATGTTGACCAGGAGACTGAGGGGGACTTGGTGAAAGCAAATCCAAAGAGACAACTGGAATTAGAAGAAGGTATTAGGGACAATATCAAAAGAACCAGGATGAATGAGCAAGAAGAAAGCTCAGATTGGCATCCTTGTCAAGAAAAAAATAAGTATCAGTTGAGGGACGACTTGTTTCCAGAGAGTAGGTTTACAAGTAATCCATCTAGCAAATATTTCAAGACAAGTCTCCCATCCTATTCAATTCATGCACAGGGATTGACTATAGCTCAAAACCATCATATGTACAATGGATATACTTCTGCAGTTTTGAGTCGTTCACCTAAGTCAAGCTTTCTTACTCAGAAACTTTTGAATACTGACAAAGAATATCATGCCTCTAGATCTGCATTCTCTGGCTCAGAGCGGGAGGAGTTACCTCTGGTTGGTTCATCTAGTGTTCCAATAGACTCTGCTGCATATATATCAAAAATATGTTCTTATGATTGGGAACCTTCTGAACCGTTTCAACCATCATTTTTCATTACGTCAATGAGCGTATCACCCCTTGGAGACCTGTATGACCCTCTTCGAGATAGCATGGAGATACCAAATATAGGAGATGGGTCTTTGAAAGCTTCCCTAGTAATTCATGGATCATGTATCCAGGCTTCATCACAGGTTCTGAAATATGGTGATTCGGCTGTAGTTGGGAAACACATGTCTGATATTAATGATGAGAAAAGTTCTGTATCTTCTCATAATAGATTTGGTGAGAATCAGCCAAAAAGTTTGGTTCCTCGTGAAAAAGATTGTCATGCAACTGAAATGGAAATAACATCAGGGAGTTGTATAAACTACCCCAATGGTAAAATGGGCATGGGACAACAAACCTCTGGTGTCAAAGATGTCACAAAAGCAGACAGAGAAAGGACTCAACATGATGCTAGACATCATGGTGAAGGATCAGCACACAAGAAGAGAGTAGATAGGGATAAGAAAATTAATGATACAGATGCCGACTTGCAGGCAGAAAGCAGCATGCAAAAGGAATCCAAAGCAATGAGACACTTCCGTGCGGCTCTTGTTGAACAGGTGAAAGAGTTGTTAAAACCATCTTGGCATGAGGGCCGGCTCAGTAAGGATGCACATATCTTGATTGTTAAAAGATCAGTTGACAAGATACTTAGCACCTTAGAGCCTCAGCAAATTCCACCCACTATAGATGCTACTAAGCAATATGTTTCTTTATGTCGAGGAAAAATTGCAAAGATGGTCAATGGATATATCAACAAATTTGGCAAGTCTTGA 2604 0.424 MSPPLADHGNTDPQDDDDDDDEEEEEEEEEEEEEVEVEVEEEVEEEEEEEDEEEEEVEVEVEEGEEEEEEEEEVEEVEEEEEEVEAEEEEPQEVEEKEEEPREVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEADGDDSHASDSVSDADNNRIDSSQQMESEVQEGNSRPASTMEENPVVKSSPSMLSNEENHAILKASIPSSEALSLKKEEANATCEIPSHPKSVNDFAAAADGKSKVLDSKEENCAILKACVDSTPSSDALTLKKEQVWPTNKISNSSHPKAVKDLASADDGKSHVLDVHAANAGLHQLTNIVGGCNELSYNSKADLGGVKDMDSGATNSSSNPGKDTPIGLPKRDGSVGGANGSQNSLKRIVPLEVESKDDVKQIKSSGTISLSPNAEMKDGNKRQRIICAFFAKGWCIRGNYCSFLHIKDSANNVDQETEGDLVKANPKRQLELEEGIRDNIKRTRMNEQEESSDWHPCQEKNKYQLRDDLFPESRFTSNPSSKYFKTSLPSYSIHAQGLTIAQNHHMYNGYTSAVLSRSPKSSFLTQKLLNTDKEYHASRSAFSGSEREELPLVGSSSVPIDSAAYISKICSYDWEPSEPFQPSFFITSMSVSPLGDLYDPLRDSMEIPNIGDGSLKASLVIHGSCIQASSQVLKYGDSAVVGKHMSDINDEKSSVSSHNRFGENQPKSLVPREKDCHATEMEITSGSCINYPNGKMGMGQQTSGVKDVTKADRERTQHDARHHGEGSAHKKRVDRDKKINDTDADLQAESSMQKESKAMRHFRAALVEQVKELLKPSWHEGRLSKDAHILIVKRSVDKILSTLEPQQIPPTIDATKQYVSLCRGKIAKMVNGYINKFGKS 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181460g00011 867 MobiDBLite consensus disorder prediction 738 766 - -
Stsc181460g00011 867 MobiDBLite consensus disorder prediction 335 370 - -
Stsc181460g00011 867 MobiDBLite consensus disorder prediction 149 188 - -
Stsc181460g00011 867 SUPERFAMILY CCCH zinc finger 408 432 IPR036855 GO:0046872
Stsc181460g00011 867 MobiDBLite consensus disorder prediction 676 695 - -
Stsc181460g00011 867 ProSiteProfiles Zinc finger C3H1-type profile. 408 435 IPR000571 GO:0046872
Stsc181460g00011 867 Coils Coil 18 138 - -
Stsc181460g00011 867 MobiDBLite consensus disorder prediction 1 188 - -
Stsc181460g00011 867 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 30 865 - -
Stsc181460g00011 867 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 413 432 IPR000571 GO:0046872
Stsc181460g00011 867 MobiDBLite consensus disorder prediction 12 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181460g00011 Stsc-Chr181460 60563 65332 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc181460g00011 zf-CCCH 9.9e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181460g00011 - - aip:107633879 1141.72