LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181460g00004	ATGGGCTGCGTGGTGGTCAAGCAAGGGGTGGTGTCTGTCACGCCGGCGGGGGAACACTCCGGGGAGGATGACAGGAGGAGGAACAAGACTGACTCAGCGAGTCGGATCAGCGAGTTGAGTGACTCGGGGAGGGCCAGTGAGTCCTTCAGCAGCTTCAGCCTCGTCGGGAATTTGCACAAGTACGTCGAAGGTGAGCAGGCGGCGGCGGGTTGGCCCGCTTGGCTTAGCGCCGTCGCCGCTGAGGCCATTCAGGGTTGGGTTCCCCTCCGTGCTGATGCTTTTGAGAAGCTTGAGAAGATTGGGCAGGGTACATATAGCAGTGTTTTCAGAGCAAAGGAGCTTGAGACTGGGAAGATAGTGGCTCTCAAGAAGGTGAGGTTCGACAATTTTGAGCCGGAGAGTGTCCGGTTTATGGCTAGGGAGATAATGATCCTTAGAAGGCTTGATCATCCCAACATCATCAAATTGGAGGGCTTGATTACCTCCAGGTTGTCTTGTAGCATCTACCTTGTCTTTGAGTACATGCAACATGACATCACAGGGCTTTTGTCTAGACCAGAAATCAATTTTGATGAATCACAGATTAAATGCTACATGAAACAGTTGTTATCTGGTCTTGAGCATTGTCACTCAAAGGGTGTAATGCACCGAGACATCAAGGGGTCGAATCTTTTGGTGAATGATGAAGGCATATTGAAGGTGGCGGATTTTGGATTGGCGAACTGGTGCAATTCAGGGAACAAAAAGCAGCCCCTCACAAGCCGTGTTGTCACCTTGTGGTACCGTCCGCCAGAACTCTTGCTCGGCGCGACAGATTATAGTCCGTCCGTGGATCTCTGGAGTGTTGGCTGTGTTGAGCAATTGCATAAGATCTTCAAGCTCTGCGGCTCTCCACCTGATGATTACTGGAAAAAGACCAAACTTCCTCATGCAACTTTGTTCAAGCCACAACAACCATACGATAGCAGTCTCCAGGAGACGTTTAAAGATTTTCCTGCAACCAGCATAAATGTGCTACAAACGCTTCTTTCTGTCGAGCCGAGCAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGTACTTCAAAACGAAACCTTATGCATGCGATCCATCAAGCATGCCAATATACCCACCTAGCAAGGAGATTGATGCAAAGCACCAGGAGGAATCAAAAAGGAAAAAGATTAGCAGCCGAGCTTGTGGACCAGAATCACGAAAATCATCAAGAAAGCCACTGGCACTCAGTAAATTAGCCCCAGCTGAGGATTTGACAAGTCAAATTCAAACCTCCCAGAGGCAAAAGGTTGATGATAGTTCTTGCCAAGTCCTTAAAGAAGAGAACATTGACATAGATGGGGAGGCACCCAAGCTATCTAGTGATAAACCACGAGAACAAGATTGTTCCCATATGAAGGATGAAACCAAAGTTGATATTCCCTTTCCAGGACCATTACAAGTTTCAAAATCAAGTGGCTTTGCATGGGCTAAAAGGCGTAAAGATGACACTTCTATTAGAGCACATTCTCGATCAATTTCGAGAGGGCACTTGTATAATTCCTTAGAAACTTCGGCAGTGAATTCAAGGAATAATTCTGAATCCAGAAACTATGAAAACAAGGAACTCTGCGGAGGACGCTCCAACTCTAGGGGCCGTGACCTGCTCGAAATTTCTAAGCTTGTAATGCAGAACCAGTGGAATAAGTTTGATCGTCCAGACTCATTTGATACTTCTGATGAGTACCATTCACAAGAACTATCTATGACACTTTATCACAGAGAAGACTCATTATCCAAGAGAAGTAACCTGAGTTCAAAGGATCAAGGAGACACTGTTGATTTTTCAGGACCCCTAATATCTCAAATGCACACCGTCGATGAGCTCTTAGAAAGACATGAGCGACACATAAGGCGTACTGTCCGGCGATCATGGTTTCAGAAAGGTAAGAAGAATGGGAAGTAA	1962	0.4674	MGCVVVKQGVVSVTPAGEHSGEDDRRRNKTDSASRISELSDSGRASESFSSFSLVGNLHKYVEGEQAAAGWPAWLSAVAAEAIQGWVPLRADAFEKLEKIGQGTYSSVFRAKELETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMQHDITGLLSRPEINFDESQIKCYMKQLLSGLEHCHSKGVMHRDIKGSNLLVNDEGILKVADFGLANWCNSGNKKQPLTSRVVTLWYRPPELLLGATDYSPSVDLWSVGCVEQLHKIFKLCGSPPDDYWKKTKLPHATLFKPQQPYDSSLQETFKDFPATSINVLQTLLSVEPSKRGTATSALSSEYFKTKPYACDPSSMPIYPPSKEIDAKHQEESKRKKISSRACGPESRKSSRKPLALSKLAPAEDLTSQIQTSQRQKVDDSSCQVLKEENIDIDGEAPKLSSDKPREQDCSHMKDETKVDIPFPGPLQVSKSSGFAWAKRRKDDTSIRAHSRSISRGHLYNSLETSAVNSRNNSESRNYENKELCGGRSNSRGRDLLEISKLVMQNQWNKFDRPDSFDTSDEYHSQELSMTLYHREDSLSKRSNLSSKDQGDTVDFSGPLISQMHTVDELLERHERHIRRTVRRSWFQKGKKNGK	653

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181460g00004	653	PANTHER	CELL DIVISION PROTEIN KINASE	92	366	-	-
	Stsc181460g00004	653	MobiDBLite	consensus disorder prediction	373	467	-	-
	Stsc181460g00004	653	SMART	serkin_6	94	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181460g00004	653	CDD	STKc_CDK9_like	94	362	-	-
	Stsc181460g00004	653	MobiDBLite	consensus disorder prediction	18	34	-	-
	Stsc181460g00004	653	MobiDBLite	consensus disorder prediction	382	406	-	-
	Stsc181460g00004	653	MobiDBLite	consensus disorder prediction	439	467	-	-
	Stsc181460g00004	653	MobiDBLite	consensus disorder prediction	422	438	-	-
	Stsc181460g00004	653	Gene3D	Phosphorylase Kinase; domain 1	81	176	-	-
	Stsc181460g00004	653	FunFam	probable serine/threonine-protein kinase At1g54610	81	176	-	-
	Stsc181460g00004	653	ProSiteProfiles	Protein kinase domain profile.	94	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181460g00004	653	Pfam	Protein kinase domain	94	362	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc181460g00004	653	MobiDBLite	consensus disorder prediction	523	548	-	-
	Stsc181460g00004	653	ProSitePatterns	Protein kinases ATP-binding region signature.	100	123	IPR017441	GO:0005524
	Stsc181460g00004	653	MobiDBLite	consensus disorder prediction	14	40	-	-
	Stsc181460g00004	653	SUPERFAMILY	Protein kinase-like (PK-like)	88	369	IPR011009	-
	Stsc181460g00004	653	Gene3D	Transferase(Phosphotransferase) domain 1	177	402	-	-
	Stsc181460g00004	653	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	214	226	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181460g00004	Stsc-Chr181460	14528	18270	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181460g00004	86	422	Core Cell Cycle Gene Families	AT5G10270	45.405	2.41e-100	314

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Stsc181460g00004		Pkinase	4.1e-62	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181460g00004	-		-	aip:107633955	1141.72