Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181460g00001 GTTGTTGAAGTTTCGACTTCGAAGACTGGGAAGCACGGTCACGCTAAGTGCCACTTTGTTGGAATTGATATCTTCACTGCCAAGAAGCTCGAAGATATTGTTCCCTCTTCTCACAACTGTGATGTTCCCCATGTGAATCGTACTGACTACCAGCTCATTGATATCTCTGAGGATGGATTTGTGAGTCTGCTCACTGAAAATGGAAACACCAAGGATGATCTCAGGCTCCCTACTGATGATTCTCTCCTGTCTCAGATTAAGGATGGGTTTGCTGAGGGTAAGGACCTTGTTGTCTCTGTCATGTCTGCTATGGGTGAGGAGCAGATTTGTGCCCTGAAGGATATTGGCCCAAAGAACTAA 360 0.4583 VVEVSTSKTGKHGHAKCHFVGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181460g00001 119 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 116 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Stsc181460g00001 119 NCBIfam translation initiation factor IF-5A 1 112 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Stsc181460g00001 119 SUPERFAMILY Nucleic acid-binding proteins 45 115 IPR012340 -
Stsc181460g00001 119 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 9 16 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Stsc181460g00001 119 PIRSF Transl_init_eIF5A 1 116 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Stsc181460g00001 119 Gene3D - 1 43 IPR014722 -
Stsc181460g00001 119 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 44 113 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Stsc181460g00001 119 SUPERFAMILY Translation proteins SH3-like domain 1 52 IPR008991 -
Stsc181460g00001 119 SMART eIF_5a_2 44 113 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Stsc181460g00001 119 FunFam Eukaryotic translation initiation factor 5A 45 117 - -
Stsc181460g00001 119 CDD S1_eIF5A 45 115 - -
Stsc181460g00001 119 Gene3D - 45 118 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181460g00001 Stsc-Chr181460 4749 5636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181460g00001 1 118 Eukaryotic Initiation Factors Gene Family AT1G69410 86.441 2.51e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181460g00001 K03263 K02180 ming:122084193 238.81