Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181459g00013 ATGCATGCTATTTCTTCTCCTCCTCCTCCATCATCACCATCATCTTCTTCTTCCAATTCTATTTGGGTGTTGTCTAGCATAAAGCTTCAATTCTTTGCAAGAATCCGAAGGTTTATCCAATCCAAAGCGGCGCGAAAGCGGCGGAGCCAATCAAGAAACAGAGCCGAGCAGAACAATAATAGCAAGATTGAAAACGATGAAACGGTTCAAGTTATGGAGAAGCATGAGGATGATGAGAAGGAAGAAGAGGAGTTGGACTCTGCTATGATATTGCAGAGGACAGTGAAGAAGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGGTTGCAGCCATGGATATTGAAAAGTTGGCAAAAGAAGATTTGAAGGTTAGAAAGTTGATAACAGAACTCGGTGTCGTGCCTGTCTTGGTCTCTATGGTGGCTTCCGACGTCGCCACCCGCCGCCGAGCGGCGTTGGTGGCGTTGATCCACCTTGCTGATGGAACTTACACGAACAAGGCTATGATAGTGGAGGCAGGAATATTATCCAAGCTGCCAAACACAATTGACCTTGTGGATGAATCAACAATCAATGAATTTTCTGAGTTGCTATTATCTTTGTCTTCTCTAGCAAACACTCAATTCCATTTTCCTTCACTAGACTTTCTACCATCACTCCGACACATTCTTGAGTCAAACTACTCAAGCTTTGACACAAAAACATCATGTTTGGGTGCCCTATACAACTTTTCAACCGTGTTAGAGAATGCAGGACCTTTGGTTTCAACTGGGATTGTTCCTATTTTATTAGAACTGTCCTCAACAAAAGAAACTTCAGAGAAAGCATTGGCAACTCTAGGGAACTTGTTAGTGACCATGATGGGGAAGAAAGCAATAGAGAATAGCTCTTTAGTGCCAAAGAACTTCATTCAGATCTTGTCATGGGAAGACAAACCAAAATGCCAAGAGTTATCTGTTTATATATTGATGATCCTGGCACATCAAAGTTCCAGTCAAAGGGAGAAAATGGCACAGGCTGGGATTGTTCCTGTGCTTCTTGAAGTGGTTCTGTTGGGAAGCTCTTTGGCTCAGAAGAGAGCATTGAAACTACTGCAATGGTTCAAGGATGAGAGGCAAACCAAGATGGGCCCACATTCGGGCCCACAAACACCAAGGTTTGCATCCATGGGGTCCCCGGTGAATCAAAGAGAAGCAATGGAAGGGAAGAAGATGATGAAGAGTTTGGTTAAACAAAGCTTGCATAGGAACATGGAGATTATTACACAGAGGGCTAATGCTGCTGGAGACTCTTCTTCTAGACTTAAGTCGTTGGTTATTAGCACCAGTTCTAAGAGTTTGCCTTATTAG 1347 0.4343 MHAISSPPPPSSPSSSSSNSIWVLSSIKLQFFARIRRFIQSKAARKRRSQSRNRAEQNNNSKIENDETVQVMEKHEDDEKEEEELDSAMILQRTVKKLHFGSWEEKEVAAMDIEKLAKEDLKVRKLITELGVVPVLVSMVASDVATRRRAALVALIHLADGTYTNKAMIVEAGILSKLPNTIDLVDESTINEFSELLLSLSSLANTQFHFPSLDFLPSLRHILESNYSSFDTKTSCLGALYNFSTVLENAGPLVSTGIVPILLELSSTKETSEKALATLGNLLVTMMGKKAIENSSLVPKNFIQILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVPVLLEVVLLGSSLAQKRALKLLQWFKDERQTKMGPHSGPQTPRFASMGSPVNQREAMEGKKMMKSLVKQSLHRNMEIITQRANAAGDSSSRLKSLVISTSSKSLPY 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181459g00013 448 SMART arm_5 120 160 IPR000225 GO:0005515
Stsc181459g00013 448 SMART arm_5 162 202 IPR000225 GO:0005515
Stsc181459g00013 448 SMART arm_5 245 284 IPR000225 GO:0005515
Stsc181459g00013 448 MobiDBLite consensus disorder prediction 373 392 - -
Stsc181459g00013 448 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 23 448 - -
Stsc181459g00013 448 MobiDBLite consensus disorder prediction 42 85 - -
Stsc181459g00013 448 Gene3D - 62 427 IPR011989 -
Stsc181459g00013 448 MobiDBLite consensus disorder prediction 376 390 - -
Stsc181459g00013 448 SUPERFAMILY ARM repeat 95 367 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181459g00013 Stsc-Chr181459 47131 50432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181459g00013 104 384 U-box Gene Family AT1G67530 28.472 2.55e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181459g00013 - - adu:107468248 711.835