Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181458g00004 ATGGCCGCAGCAGCAGCTCGACCTCTTGTCACCGTCCAACCCTTGGATGGCGACATGGCCACCGACTCCCAACCAACTGTCCCACTTCCCGATGTCATGAAGGCCGCCATTCGCCCTGACATCGTCACATTCGTCCACGACAACGTCTCCAAAAACTCTCGCCAGCCCTACGCCGTCTCCCGCCGCGCCGGCCACCAGACCTCCGCCGAGTCCTGGGGAACCGGCCGTGCCGTCTCCCGTATCCCCCGTGTTCCCGGCGGCGGAACTCACCGCGCCGGCCAGGGAGCCTTCGGAAACATGTGCCGCGGCGGGCGCATGTTCGCACCTACCAAGATCTGGCGCCGGTGGCACCGCAAGATCAACGTCAACCAGAAGCGCTACGCCGTCGTTTCTGCCATCGCCGCCTCCGCCGTCCCCTCTCTCGTGGTCGCACGCGGTCACCGCATTGACACCGTTCCGGAGCTCCCTCTCGTCGTGTCAGATGCCGCGGAAGCCGTTGAGAAGACAAAGGAAGCGATCAACGTGTTGAGATCCATCGGAGCTTATGCTGACGCTGAGAAGGCAAAGGACAGCCACGCAATTCGCCCTGGGAAGGGGAAAATGCGTAACCGCCAATACATTTCAAGAAAGGGGCCTCTGATTGTGTACGGAACCGAGGGAGCCAAGGCTGTTAAGGCGTTCCGGAACATTCCTGGCGTCGAGGTTGCGAACGTTGAGAGATTGAATTTGTTGAAACTGGCACCCGGTGGACACCTTGGGAGGTTTGTGATTTGGACTAAGTCGGCTTTTGAGAAGCTCGATTCGATATATGGTTCGTTTGAGAAGCCATCTGAGAAGAAGAAAGGGTATTTGCTTCCAAGGGCGAAGATGGTGAATGCAGATTTGGCTAGGATTATTAACTCTGATGAGGTGCAGTGTGTTGTGAGGCCGATCAAGGAGGAGGTTAAGAGGGCTACATTGAAGAAGAACCCTCTGAAGAACCTGAATGTGATGCTGAGGTTGAACCCTTATGCTAAGGCTGCTAAGAGGATGGCACTTCTCGCTGAGGCACAACGCGTTAAGGCCAAGAAGGAGAAGCTTGATCAGAAGAGGAAGACAGTTTCCAAGGAGGAGGCTTCTGCTATCAGGGCTGCTGGAAAGGCATGGTATCAAACTATGGTGTCAGATTCTGATTACACTGAATTTGATAACTTCTCTAAGTGGTTGGGTGTTTCACAGTGA 1221 0.5545 MAAAAARPLVTVQPLDGDMATDSQPTVPLPDVMKAAIRPDIVTFVHDNVSKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVVARGHRIDTVPELPLVVSDAAEAVEKTKEAINVLRSIGAYADAEKAKDSHAIRPGKGKMRNRQYISRKGPLIVYGTEGAKAVKAFRNIPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYLLPRAKMVNADLARIINSDEVQCVVRPIKEEVKRATLKKNPLKNLNVMLRLNPYAKAAKRMALLAEAQRVKAKKEKLDQKRKTVSKEEASAIRAAGKAWYQTMVSDSDYTEFDNFSKWLGVSQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181458g00004 406 PANTHER 60S RIBOSOMAL PROTEIN L4 5 399 IPR045240 -
Stsc181458g00004 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Stsc181458g00004 406 Pfam Ribosomal protein L4/L1 family 27 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Stsc181458g00004 406 SUPERFAMILY Ribosomal protein L4 12 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Stsc181458g00004 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Stsc181458g00004 406 FunFam 60S ribosomal protein L4 4 309 - -
Stsc181458g00004 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Stsc181458g00004 406 Coils Coil 343 370 - -
Stsc181458g00004 406 MobiDBLite consensus disorder prediction 57 96 - -
Stsc181458g00004 406 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181458g00004 Stsc-Chr181458 29205 31374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181458g00004 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.512 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181458g00004 K02930 - gmx:100779764 724.931