Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181458g00003 ATGAACTCCAACAACACCACTTCTAATCCTCAGTCAATGGTGACACCAACGCCAACTGCCACAACCGCCACCACCGCCACCACCACTGCCACCGCGACTGATGCCTCTGCAAAGAAGGTCAGAAAGCCTTACACCATTACCAAGTCCAGAGAGAGCTGGACTGACGAAGAACACGACAAGTTTCTAGAAGCTCTTCAGCTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGATCAAAAACAGTTATTCAGATCAGAAGCCATGCCCAAAAATACTTCTTGAAAGTTCAGAAGAATGGAACAGTAGCACATGTGCCTCCTCCTCGCCCTAAGCGCAAAGCTGCACATCCCTACCCACAAAAGGCTTCAAAAAATGTTTTGATGCCACTGCCAGCATCCATTGCTTATGCTCCTTCGACAAATGCCCTTGCACCTGGGTATGTCACATGGGATGAAGCTTCTCTGCTGGTGAACCCCGGATCAAATAAATCATCAACCTGTCAAGATGAACTCAGCAATCTTCATGGAATTGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAGTAACAGCAGTCTTAATGGTGTCGGGAACTCAACTAGAAAGCTGTTGACTTCTGAGATACCAAAGCAAGGGAAACCGGCACCAGTTATTCATGGTTTGCCGGATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTTTTTGATCCAGATACAAATAACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGAATTTGAGCCCATCAAGAATGTATTGTCAACATATGATATCAGTGCCATGAGGGTAGGAGTTACGGCAGCAGGAATCGATGTCAAGCAGCAACCGAATGACCTATCATGTCAAACTGCTTAA 945 0.4413 MNSNNTTSNPQSMVTPTPTATTATTATTTATATDASAKKVRKPYTITKSRESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLMPLPASIAYAPSTNALAPGYVTWDEASLLVNPGSNKSSTCQDELSNLHGIEADIGSKGITQISNSSLNGVGNSTRKLLTSEIPKQGKPAPVIHGLPDFAEVYSFIGSVFDPDTNNHVQKLKEMDPINFETVLLLMRNLTVNLSSPEFEPIKNVLSTYDISAMRVGVTAAGIDVKQQPNDLSCQTA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181458g00003 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 45 99 IPR017930 -
Stsc181458g00003 314 MobiDBLite consensus disorder prediction 1 42 - -
Stsc181458g00003 314 FunFam protein REVEILLE 6 isoform X1 52 100 - -
Stsc181458g00003 314 Gene3D - 53 100 - -
Stsc181458g00003 314 SMART sant 49 97 IPR001005 -
Stsc181458g00003 314 NCBIfam myb-like DNA-binding domain, SHAQKYF class 48 97 IPR006447 GO:0003677
Stsc181458g00003 314 ProSiteProfiles Myb-like domain profile. 45 95 IPR001005 -
Stsc181458g00003 314 Pfam Myb-like DNA-binding domain 50 95 IPR001005 -
Stsc181458g00003 314 CDD SANT 52 95 IPR001005 -
Stsc181458g00003 314 PANTHER SWI/SNF COMPLEX-RELATED 17 272 - -
Stsc181458g00003 314 SUPERFAMILY Homeodomain-like 44 100 IPR009057 -
Stsc181458g00003 314 ProSiteProfiles SANT domain profile. 48 101 IPR017884 -
Stsc181458g00003 314 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181458g00003 Stsc-Chr181458 22976 28212 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc181458g00003 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181458g00003 - - gmx:100797466 481.1