Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181456g00007 ATGTCTATAAACCACTACTCTTCTACTTCCCCTATGGATCTCCACGAAACGACACCGTTATGGTGGACTCAACAACAACATAACATGCTAATGGAACCAATTCCAAATCACCACCACCACTATCACCACAATAATCATCACAATTCCCAAAACACCCCTCGCTTCTTCAACCTCAACAGCCAAGAAATTACCGAACAAACCACGACATCGCAAGAAGAAGACGAAGAGGAAGAACCGCCACCACCACAGCCACCACGGCCATCACAAGAAGACATCCAGGGAGGAGAAGACGGAGACGATGACGAGGACGAAGGAGAGGGAGAACAACAAAAGGAGAGAATGTTCGAGAAGCCGTTAACACCGAGTGACGTTGGAAAGCTTAACCGCCTCGTGATCCCAAAGCAGCACGCGGAAAAGTACTTCCCTCTAACTAATTCAGTTACAACAACCACAACTGAGTCAGGGACCGAGTGCAAGGGTTTGTTACTGAGTTTCGAGGACGAGTCAGGAAAGTGTTGGAGATTCCGTTACTCTTATTGGAACAGTAGCCAAAGTTATGTGTTAACCAAAGGTTGGAGCCGTTACGTCAAAGACAAGCGACTCGACGCCGGCGACGTCGTTTCGTTCGAGCGCCACCGTGCTGACTCTCAGAGACTCTTTATTCGCTGGAGGCGCCGATCTTCGCCGCCGGTGTTGGCGCAAGTTGGTAGGGTGGCGGCTCAAGCTGGTGGCGGTGATGGCGGTGGTAATGTTAATGTGAATAGTGAGAAGAGTGGTGTAGGGTGGACTAGCGGATTCTATTGTGCGCACCCTTCTTATCCTGCGCATCATCTTCATAATCAGCACTTAACATATCCACAACAACATGAGGGTAGTAGTAGTAGTCTTCATGCAGGGTCCCAAGGGAAGAACCAAAGGATGAGACCAATTGGGAACTGTTCAAGTTCAAGTTCGAAGGTACTTAGGTTGTTTGGGGTGAACATGGAATGCCAACCTCAACATGATGATGATTCTCAAGCTTCAACAACAATAAGAAGAGAGGGTACTACTAATTCAGATAATAATACCCACCATAATTTCTGCTACCATAATTACTATCATCAACCTTCTAATGATTCTCACCCTAATCACAATCACATGCTACCTCATCAACAATCATATTACTATTAG 1170 0.4667 MSINHYSSTSPMDLHETTPLWWTQQQHNMLMEPIPNHHHHYHHNNHHNSQNTPRFFNLNSQEITEQTTTSQEEDEEEEPPPPQPPRPSQEDIQGGEDGDDDEDEGEGEQQKERMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLTNSVTTTTTESGTECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFERHRADSQRLFIRWRRRSSPPVLAQVGRVAAQAGGGDGGGNVNVNSEKSGVGWTSGFYCAHPSYPAHHLHNQHLTYPQQHEGSSSSLHAGSQGKNQRMRPIGNCSSSSSKVLRLFGVNMECQPQHDDDSQASTTIRREGTTNSDNNTHHNFCYHNYYHQPSNDSHPNHNHMLPHQQSYYY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181456g00007 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 36 342 IPR044800 GO:0003700
Stsc181456g00007 389 MobiDBLite consensus disorder prediction 34 127 - -
Stsc181456g00007 389 SUPERFAMILY DNA-binding pseudobarrel domain 110 228 IPR015300 -
Stsc181456g00007 389 MobiDBLite consensus disorder prediction 332 356 - -
Stsc181456g00007 389 CDD B3_DNA 113 217 IPR003340 GO:0003677
Stsc181456g00007 389 FunFam B3 domain-containing protein 108 235 - -
Stsc181456g00007 389 Gene3D - 103 231 IPR015300 -
Stsc181456g00007 389 ProSiteProfiles B3 DNA-binding domain profile. 115 227 IPR003340 GO:0003677
Stsc181456g00007 389 SMART B3_2 115 227 IPR003340 GO:0003677
Stsc181456g00007 389 Pfam B3 DNA binding domain 115 227 IPR003340 GO:0003677
Stsc181456g00007 389 MobiDBLite consensus disorder prediction 285 312 - -
Stsc181456g00007 389 MobiDBLite consensus disorder prediction 330 356 - -
Stsc181456g00007 389 MobiDBLite consensus disorder prediction 48 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181456g00007 Stsc-Chr181456 60909 64410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181456g00007 111 344 RAV Transcription Factor Family AT5G06250 50.617 1.01e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc181456g00007 B3 1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181456g00007 K09287 - gmx:100795470 334.339